DR405827

Overview
NameDR405827
Unique NameDR405827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6300 contig Csv1_Contig6300:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR405827 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 3 
Query:    3 GARQNPYSLFSLSNFISENNHQMSSDGIFGNNMVPKLRRVSTEL-NIGSSQSDNLSPDSHSSVHSFGTELGGNQGCNSTKVGVRSIQLFGKIIHMKQPVESGFGDVVCPHDDGSKGFSERE 362
            GARQ  +  F+ + FI  N  Q+ ++     + +P L +VSTE+ N GS  SDNLSP+S+++  S G +L GN+G  S K  V SIQLFGKII +++  ESG  +     +DGSK  S+ E
Sbjct:  443 GARQYDFGSFNPTGFIGGNPPQLFTNNFL--SPLPDLGKVSTEMMNFGSPPSDNLSPNSNTTNLSSGNDLVGNRGPLSKK--VNSIQLFGKIITVEEHSESGPAESGLCEEDGSKESSDNE 559
The following BLAST results are available for this feature:
BLAST of DR405827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFQ_ARATH7.958e-1442.98Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247M22 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247M22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405827 ID=DR405827; Name=DR405827; organism=Citrus sinensis; type=EST; length=694bp
GGGGAGCCAGGCAAAATCCTTATAGCTTATTTAGTTTATCAAACTTCATA
AGCGAGAATAATCATCAGATGTCCTCTGATGGTATCTTTGGCAACAACAT
GGTGCCAAAGTTGAGACGTGTGTCCACTGAGCTGAACATTGGCAGTTCAC
AGTCTGACAACTTATCACCCGATAGCCACAGTAGTGTGCATTCCTTTGGC
ACTGAACTTGGTGGGAACCAGGGCTGTAACTCGACAAAAGTTGGTGTTAG
GTCAATTCAGTTGTTTGGTAAGATCATACATATGAAGCAGCCTGTTGAAA
GTGGTTTTGGTGATGTTGTTTGCCCGCATGATGATGGTAGTAAAGGGTTC
AGTGAAAGGGAAGATGTGAATTTGCCATTGGATTTGTCCTTGACTTACAC
AGAACTGCTCAACAGGTTTGGTATCCAAGGTCGTGGCTCAGAAGTTGAAG
ATGAAGTAGTTGCTGAAGCTTGCTCTTTATGAAAAAATAATTGTGCAATG
AAATGCAGATATGTTCCTGTGCAGGTACTCTGGCAGGTGGGAGCAGGAAG
ATGACTTGGTGGGCTTTGTCAGTACTAGTTTGTGTATGCTGGTTTGTTTA
GGTGGTTATGATGAAAACTTGGAGCTATCGTAGACTTAGTTATACCAGTT
AAATCAAGTACTATATGTTGNGTGTGGGAATTTCATATTGCTGT
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