DR405826

Overview
NameDR405826
Unique NameDR405826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405826_ssr195 microsatellite DR405826_ssr195:195..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.187e-76
Identity = 135/150 (90.00%), Postives = 140/150 (93.33%), Query Frame = 3
Query:  222 STMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            S MGD  TDAGMDAVQRRLMFEDECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGKWG
Sbjct:   73 SAMGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWG 222          

HSP 2 Score: 25.7942 bits (55), Expect = 3.187e-76
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  670 GEHELDYLLF 699
            GEHELDYLLF
Sbjct:  222 GEHELDYLLF 231          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.167e-76
Identity = 135/148 (91.22%), Postives = 140/148 (94.59%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYKAPSDGKWG
Sbjct:    1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWG 148          

HSP 2 Score: 25.7942 bits (55), Expect = 4.167e-76
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  670 GEHELDYLLF 699
            GEHELDYLLF
Sbjct:  148 GEHELDYLLF 157          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.008e-74
Identity = 132/144 (91.67%), Postives = 138/144 (95.83%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            T DAGMDAVQRRLMFEDECILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWG
Sbjct:   55 TKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWG 198          

HSP 2 Score: 25.7942 bits (55), Expect = 1.008e-74
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  670 GEHELDYLLF 699
            GEHELDYLLF
Sbjct:  198 GEHELDYLLF 207          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 1.317e-74
Identity = 133/144 (92.36%), Postives = 137/144 (95.14%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            + DAGMDAVQRRLMFEDECILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWG
Sbjct:    4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWG 147          

HSP 2 Score: 24.6386 bits (52), Expect = 1.317e-74
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  670 GEHELDYLLF 699
            GEHE+DYLLF
Sbjct:  147 GEHEVDYLLF 156          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 1.714e-74
Identity = 134/150 (89.33%), Postives = 141/150 (94.00%), Query Frame = 3
Query:  222 STMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            +TMG+   DAGMDAVQRRLMFEDECILVDEND+VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWG
Sbjct:   53 TTMGEVV-DAGMDAVQRRLMFEDECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWG 201          

HSP 2 Score: 25.7942 bits (55), Expect = 1.714e-74
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  670 GEHELDYLLF 699
            GEHELDYLLF
Sbjct:  201 GEHELDYLLF 210          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.664e-72
Identity = 129/148 (87.16%), Postives = 138/148 (93.24%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            MG+A  DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYKAPSDGKWG
Sbjct:   57 MGEAAADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWG 204          

HSP 2 Score: 25.7942 bits (55), Expect = 2.664e-72
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  670 GEHELDYLLF 699
            GEHELDYLLF
Sbjct:  204 GEHELDYLLF 213          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 2.664e-72
Identity = 131/148 (88.51%), Postives = 139/148 (93.92%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            MG+A  DAGMDAVQRRLMF+DECILVDE DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWG
Sbjct:   54 MGEAA-DAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWG 200          

HSP 2 Score: 25.7942 bits (55), Expect = 2.664e-72
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  670 GEHELDYLLF 699
            GEHELDYLLF
Sbjct:  200 GEHELDYLLF 209          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.629e-39
Identity = 88/148 (59.46%), Postives = 103/148 (69.59%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WG
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWG 145          

HSP 2 Score: 24.2534 bits (51), Expect = 6.629e-39
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  670 GEHELDYLLF 699
            GEHE+DY+LF
Sbjct:  145 GEHEIDYILF 154          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.637e-39
Identity = 90/148 (60.81%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            M + +TD  +D  Q +LM E  CILVDENDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA SD  WG
Sbjct:    1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWG 145          

HSP 2 Score: 21.9422 bits (45), Expect = 8.637e-39
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  670 GEHELDYLL 696
            GEHE+DY+L
Sbjct:  145 GEHEIDYIL 153          
BLAST of DR405826 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.242e-38
Identity = 85/139 (61.15%), Postives = 100/139 (71.94%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 671
            +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WG
Sbjct:    9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWG 145          

HSP 2 Score: 21.9422 bits (45), Expect = 3.242e-38
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  670 GEHELDYLL 696
            GEHE+DY+L
Sbjct:  145 GEHEIDYIL 153          
The following BLAST results are available for this feature:
BLAST of DR405826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDI2_CAMAC3.187e-7690.00Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI1_CAMAC4.167e-7691.22Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_ARATH1.008e-7491.67Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_ARATH1.317e-7492.36Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_CLABR1.714e-7489.33Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI2_CLAXA2.664e-7287.16Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLABR2.664e-7288.51Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_MACFA6.629e-3959.46Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_BOVIN8.637e-3960.81Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_HUMAN3.242e-3861.15Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247M21 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247M21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405826 ID=DR405826; Name=DR405826; organism=Citrus sinensis; type=EST; length=705bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGGGGGGGAGCATGAACTTGACTACTTACTTTTCN
NNNTC
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