DR405820

Overview
NameDR405820
Unique NameDR405820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6297 contig Csv1_Contig6297:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405820 vs. ExPASy Swiss-Prot
Match: ARGE_DICDI (Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.760e-39
Identity = 92/227 (40.53%), Postives = 128/227 (56.39%), Query Frame = 1 
Query:   82 LNKDSYVNLLSKLIGESRYVQNNPPELIPQEDRVVKHVLDALLPLSTKTGGGPLVINHI----TYFTGRGNLIVEYPGTEPG----KILSFVGMHMDVVTANPNEWEFDPFSLSIDGEKLCGRGTTDCLGHVALVTELMRKLGETKLKLKSTVIAVFIASEENSAITGVXRGCTCERWAT*XA*REVLFTGLTQQINNLALALGGMIPWKLHVTGKLFHSGLPHKAI 738
            L++  ++ LL KLIGE+  +QN PP LIP ED   +HV++AL P   K  GG L +  +      +  RGN+I+EYPGT  G    K +SFVG H+DVV A+   W+ +PF L I+G+KL GRGTTDCLGHVAL+T+L  +L   K  LK ++ AVFI SEEN  I G+                  ++  +    +   +  GG   W L   GK  HS +P++ +
Sbjct:   10 LDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEALTPY-LKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPADKTAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEENDEIPGIGVDALDHSGKMNPCKNGPVY-WVDSADSQPTIGTGGAQTWNLTAHGKNMHSAMPYRTV 234
The following BLAST results are available for this feature:
BLAST of DR405820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARGE_DICDI2.760e-3940.53Acetylornithine deacetylase OS=Dictyostelium disco... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAI-PNP1247M09 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247M09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405820 ID=DR405820; Name=DR405820; organism=Citrus sinensis; type=EST; length=740bp
GGGGACACGACATTCGCAAGGCTTCCTCGCTTCTCGTGTTCGGCAATGGC
TTCTTCAGTGGTGAAGGAAACTCTGGGCACTCTTAACAAGGACTCCTATG
TTAATCTTCTTTCAAAGCTAATTGGAGAGTCCAGATATGTGCAAAATAAC
CCACCTGAGTTGATCCCTCAGGAGGATAGGGTGGTCAAGCATGTATTGGA
TGCTCTCCTTCCCTTGAGCACCAAAACTGGAGGAGGACCTTTGGTTATTA
ATCATATCACATATTTTACGGGCAGAGGAAATCTTATTGTGGAGTATCCT
GGAACTGAGCCTGGAAAGATCTTGTCATTTGTTGGCATGCATATGGATGT
TGTCACCGCTAATCCTAATGAATGGGAATTTGATCCTTTTTCATTGAGCA
TTGACGGGGAAAAACTTTGTGGCCGTGGCACAACTGATTGTTTGGGACAT
GTTGCCCTTGTGACTGAACTAATGAGGAAGTTGGGGGAGACAAAACTCAA
ATTGAAGTCAACTGTGATTGCGGTCTTCATAGCTAGTGAAGAGAACTCTG
CCATAACAGGGGTTGNGCGTGGATGCACTTGTGAAAGATGGGCTACTTAA
NNNGCTTGAAGGGAGGTCCTCTTTACTGGATTGACACAGCAGATAAACAA
CCTTGCATTGGCACTGGGTGGTATGATACCTTGGAAACTTCATGTGACTG
GAAAGCTTTTTCACAGTGGTTTACCTCATAAGGCAATAAA
back to top