DR405778

Overview
NameDR405778
Unique NameDR405778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4727 contig Csv1_Contig4727:334..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR405778 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.781e-33
Identity = 66/74 (89.19%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    4 VIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS 225
            VIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+YY AFGWRR+KPSG+FQLS+
Sbjct:  436 VIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFLYYIAFGWRRKKPSGRFQLST 509
[Close]
BLAST of DR405778 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.838e-33
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:    4 VIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS 225
            VIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+YY AFGWRR+K SG+FQLSS
Sbjct:  436 VIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFLYYIAFGWRRKKTSGRFQLSS 509
[Close]
BLAST of DR405778 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    4 VIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS 225
            VIQFC+TAF YYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQ  FV LA LT  YYA FGWR+RKP+G+FQLS+
Sbjct:  437 VIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYYAIFGWRKRKPTGRFQLSN 510
The following BLAST results are available for this feature:
BLAST of DR405778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LMBD2_ARATH1.781e-3389.19LIMR family protein At5g01460 OS=Arabidopsis thali... [more]
LMBD1_ARATH8.838e-3387.84LIMR family protein At3g08930 OS=Arabidopsis thali... [more]
LMBD1_ORYSJ2.661e-2981.08LIMR family protein Os06g0128200 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247J20 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247J20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405778 ID=DR405778; Name=DR405778; organism=Citrus sinensis; type=EST; length=645bp
GGGGTAATCCAATTCTGTTCTACGGCTTTTGGATACTATGCCCAAGCAAC
TGCTGCGCAGGAAATATTTGGCCACACTTTGGAGTCTCTCCGTGGAATTA
AATACTTGTACAAGTATAATGTGTTCCAAATTGCTTTCGTTGTGCTAGCA
GGGTTGACCTTTGTTTATTATGCTGCCTTTGGGTGGAGAAGAAGAAAACC
AAGTGGCAAGTTCCAACTGTCCTCATGAAGTTGCTTTGCTTAGAAGAGCC
TGCACCCACGTAGAGCTGAAGAAATTCTAAGATTGATAATCTCAGTGAAG
TGTGTTTCATGTAATCGGATGTTTACGGCCTGGTTTTCTTTCAGGTCAAA
AAGTTTAGTGAGATAGGCGCATGTATCATCCGTAAAAAATGGGTTGCTGT
AGTTAGAGCAGCATGCGAATGTTGCTGCTGTTGTTTCTTCTTGTTTTCCC
TCTTTTTGTATCTATTATTCTTTGTTTGGTTTATGCTATACGTTTTGCTT
GGGCGTGTAAGTGAAATATCCTCAGCAGATATGGTGACTGAGTTTGTAGA
ACTGACCTTGATGTAATATAATCATTGAGAATGAGNNNTACGAAAAAAAA
AAAAAAAAAAAAAAAAAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
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