DR405734

Overview
NameDR405734
Unique NameDR405734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:18..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.198e-99
Identity = 182/216 (84.26%), Postives = 193/216 (89.35%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSKLQS+A+REA+SSI+ + KETK RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PRPKMK+CMLGDAQHVEEAEKIGL+ MDVE                  +HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+
Sbjct:    1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRV 216          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 8.033e-96
Identity = 180/216 (83.33%), Postives = 189/216 (87.50%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSKLQS+A+REA+++I   S E KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL+ MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RI
Sbjct:    1 MSKLQSEAVREAITTITGKS-EAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRI 215          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 8.881e-95
Identity = 177/216 (81.94%), Postives = 189/216 (87.50%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSKLQS+A+REA+++I   S+E KKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL  MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ+FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RI
Sbjct:    1 MSKLQSEAVREAITTIKGKSEE-KKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRI 215          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 6.848e-71
Identity = 131/215 (60.93%), Postives = 164/215 (76.28%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            SK+  D L E V+ +++ S + KKR F ET+ELQIGLKNYDPQKDKRFSG+VKL HIPRPKMKVC+LGD QH +EA+   +D+MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E K+T+KFQ+KKVLC+ VAVG++ M+  ++ QNV +S+NFLVSLLKKNWQNVR L++KS+MGP  R+
Sbjct:    3 SKVSRDTLYEGVNGLLEASAK-KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRL 216          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.992e-70
Identity = 131/215 (60.93%), Postives = 166/215 (77.21%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            SK+  D L E V++++Q SK+ KKRNF ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ + +  MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K++E KAT+KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGP  ++
Sbjct:    3 SKVSRDTLYECVNAVLQASKD-KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKL 216          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.435e-68
Identity = 126/215 (58.60%), Postives = 162/215 (75.35%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            SK+  D L EAV  ++Q SK+ KKR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  +C+LGD QH +EA+ + L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ + E+++  N+ +S+NFLVSLLKKNWQNVR LY+KSTMG   R+
Sbjct:    3 SKVSRDTLYEAVREVLQGSKK-KKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRL 216          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.255e-68
Identity = 128/216 (59.26%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSK+  D L EAV   VQ     KKR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+   L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R+
Sbjct:    1 MSKVSRDTLYEAVKE-VQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRL 215          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.062e-67
Identity = 121/216 (56.02%), Postives = 161/216 (74.54%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSK+   A+R+ V+ +++YS ETKKRNF ET+ELQIGLKNYDPQ+DKRFSG+++LP IPRP M +C+LGD   ++ A+  G+D M V+                  Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L  K+NE K+T+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK WQNV  L +K+TM P  R+
Sbjct:    1 MSKISVAAVRQHVTDLLEYSNETKKRNFLETVELQIGLKNYDPQRDKRFSGTIRLPSIPRPNMSICILGDQHDIDRAKHGGVDAMSVDDLKKLNKNKKLIKKLARKYDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRL 216          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.280e-66
Identity = 121/215 (56.28%), Postives = 159/215 (73.95%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            SK+  D L EAV  ++ +  + K+R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R+
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRL 216          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.280e-66
Identity = 125/216 (57.87%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSK+  D L EAV   VQ    +K+R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+   + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E ++  N+ ++VNFLVSLLKKNWQNVR LY+KS+MG   R+
Sbjct:    1 MSKVSRDTLYEAVRE-VQAGSISKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAEIPHMDIEALKKLNKNKKMVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMGKPQRL 215          
The following BLAST results are available for this feature:
BLAST of DR405734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
R10A3_ARATH1.198e-9984.2660S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH8.033e-9683.3360S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH8.881e-9581.9460S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
R10AB_DROME6.848e-7160.9360S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_SPOFR1.992e-7060.9360S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
RL10A_XENLA2.435e-6858.6060S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_DANRE9.255e-6859.2660S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
RL10A_NEUCR2.062e-6756.0260S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_RAT2.280e-6656.2860S ribosomal protein L10a OS=Rattus norvegicus GN... [more]
RL10A_ICTPU2.280e-6657.8760S ribosomal protein L10a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247H07 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405734 ID=DR405734; Name=DR405734; organism=Citrus sinensis; type=EST; length=795bp
GGGGAGGGTNNNTTTTTCGTATTTGAAGAAAAAAAATTCTGTAAAGGGCT
CCAAGCGCTTCAATCATGAGTAAGCTTCAGAGTGATGCACTGAGAGAGGC
CGTCTCTAGTATTGTGCAATACTCTAAGGAGACAAAGAAGAGGAACTTCA
CCGAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAG
GACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAA
GATGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGA
AGATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAG
AACAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGC
ATCAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCA
ACAAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAG
TCCAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGT
GCTTTGCATGGGAGTTGCTGTTGGAAACCTTTCAATGGAGGAGAAGCAGA
TCTTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAG
AAAAACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCC
TTCAAACCGCATCTTTTAAGAATTCTGCTTTATGTTGGAGTTTTTGTAGG
NNNAACCTAGTGTGATCTTATTATACCCAAAATGNNNTTCTTTGA
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