DR405720

Overview
NameDR405720
Unique NameDR405720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405720_ssr195 microsatellite DR405720_ssr195:195..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.652e-54
Identity = 109/157 (69.43%), Postives = 116/157 (73.89%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG      +K     G                   + P   +  GEHELDYLL
Sbjct:    1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGK-WGEHELDYLL 156          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.135e-54
Identity = 109/159 (68.55%), Postives = 115/159 (72.33%), Query Frame = 3
Query:  222 STMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            S MGD  TDAGMDAVQRRLMFEDECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHP YRESEL++ENALG      +K     G                   + P   +  GEHELDYLL
Sbjct:   73 SAMGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGK-WGEHELDYLL 230          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.994e-53
Identity = 109/159 (68.55%), Postives = 117/159 (73.58%), Query Frame = 3
Query:  222 STMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            +TMG+   DAGMDAVQRRLMFEDECILVDEND+VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LG      +K     G                   + P   +  GEHELDYLL
Sbjct:   53 TTMGEVV-DAGMDAVQRRLMFEDECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGK-WGEHELDYLL 209          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.534e-52
Identity = 106/153 (69.28%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            + DAGMDAVQRRLMFEDECILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LG      +K F   G +                 + P   +  GEHE+DYLL
Sbjct:    4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGK-WGEHEVDYLL 155          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.696e-51
Identity = 104/153 (67.97%), Postives = 113/153 (73.86%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            T DAGMDAVQRRLMFEDECILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++NALG      +K     G +                 + P   +  GEHELDYLL
Sbjct:   55 TKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGK-WGEHELDYLL 206          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.127e-50
Identity = 103/157 (65.61%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            MG+A  DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LG      +K     G                   + P   +  GEHELDYLL
Sbjct:   57 MGEAAADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGK-WGEHELDYLL 212          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49
Identity = 104/157 (66.24%), Postives = 114/157 (72.61%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            MG+A  DAGMDAVQRRLMF+DECILVDE DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LG      +K     G                   + P   +  GEHELDYLL
Sbjct:   54 MGEAA-DAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGK-WGEHELDYLL 208          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.526e-33
Identity = 62/106 (58.49%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALG 545
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +ALG
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALG 103          

HSP 2 Score: 48.9062 bits (115), Expect = 8.526e-33
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1
Query:  541 LGVRNAAQRKLXXELGICAEDVPVDEFTPLGRILYKAPSDG 663
            LGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG
Sbjct:  102 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDG 142          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.526e-33
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALG 545
            +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   +EL E +ALG
Sbjct:    9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALG 103          

HSP 2 Score: 48.9062 bits (115), Expect = 8.526e-33
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1
Query:  541 LGVRNAAQRKLXXELGICAEDVPVDEFTPLGRILYKAPSDG 663
            LGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG
Sbjct:  102 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDG 142          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.160e-32
Identity = 61/106 (57.55%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALG 545
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+T P  +TNTCCSHPL    EL E +ALG
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALG 103          

HSP 2 Score: 48.9062 bits (115), Expect = 4.160e-32
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1
Query:  541 LGVRNAAQRKLXXELGICAEDVPVDEFTPLGRILYKAPSDG 663
            LGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG
Sbjct:  102 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDG 142          
The following BLAST results are available for this feature:
BLAST of DR405720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
IDI1_CAMAC3.652e-5469.43Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CAMAC8.135e-5468.55Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI1_CLABR8.994e-5368.55Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_ARATH1.534e-5269.28Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI2_ARATH1.696e-5167.97Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI2_CLAXA7.127e-5065.61Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLABR1.588e-4966.24Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_MACFA8.526e-3358.49Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_HUMAN8.526e-3360.82Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
IDI1_PONAB4.160e-3257.55Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405720 ID=DR405720; Name=DR405720; organism=Citrus sinensis; type=EST; length=706bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGGTGA
GGAATGCTGCACAAAGAAAGCTTTTNNNNGAGCTGGGCATTTGTGCTGAA
GATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGC
CCCTTCTGATGGCAAAGTGGGGGGGAGCATGAACTTGACTACTTACTNNN
NNNTGT
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