EY680485

Overview
NameEY680485
Unique NameEY680485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680485 vs. ExPASy Swiss-Prot
Match: PEX2_ARATH (Peroxisome assembly protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.887e-71
Identity = 152/237 (64.14%), Postives = 174/237 (73.42%), Query Frame = 3
Query:    6 RLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAVETR--AKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLARRAWILIQRIEALYKAASFGNPTHISLHWKV*EPSLKEPLTARLVYGTP*YESRLLASNY*IGS*CGNGVFGNCNFYFLPLLNPVNC*KA*LGPFLKGKFFQPSRKERSLNC 710
            RLD+EMSAMLKEQLVKVF+LMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDER V  +   KVRTGLEGPGLT+ QKIWYC+A+VGGQYL++RLQSFSAFRRWGDSEQRPLARR W L+QRIE +YKAASF N     L+       +++ L ARLVY +P + +R ++  Y       N  F       LPLLN  +  K  L PF K K    S KE ++ C
Sbjct:   47 RLDVEMSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERGVVAQHLGKVRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQSFSAFRRWGDSEQRPLARRLWTLVQRIEGIYKAASFLNLLSF-LYTGRYRNLIEKALKARLVYRSP-HMNRSVSFEYMNRQLVWN-EFSEMLLLLLPLLNS-SAVKNILSPFAKDK--SSSTKEDTVTC 277          
BLAST of EY680485 vs. ExPASy Swiss-Prot
Match: PEX2_DICDI (Peroxisome biogenesis factor 2 OS=Dictyostelium discoideum GN=pex2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.504e-15
Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 3
Query:    6 RLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAVETRAKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLARRAWILIQRIEALYKAASFGNPTHISLHWKV*EPSLKEPLTARLVYGTP 521
            RLD E+  +L+ Q +K+F+  KP  +  ++PE++  L+ +I++ SI+    T GN L NL YR+E+A +    +R   +   LT  QK    +  +GG++LW R+  +     W +     + ++ W  +   E+ YKA +  N      + K     +   L  RLVY  P
Sbjct:  118 RLDEEILDLLRSQFMKIFTFFKPNFIHNFQPEINLVLKSVIYKLSIFNLGTTYGNQLQNLTYRNEKAFD---PIRGSDQLNKLTMRQKWLSGLINIGGEWLWTRINRYLINNNWSEHPPNDIRKKFWNFLNFAESAYKALALLNFLTFLFNGKY-VTLVNRILHMRLVYAHP 285          
BLAST of EY680485 vs. ExPASy Swiss-Prot
Match: PEX2_YARLI (Peroxisomal biogenesis factor 2 OS=Yarrowia lipolytica GN=PEX2 PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 7.339e-11
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = 3
Query:    9 LDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAVETRAKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGD-------SEQRPLARRAWILIQRIEALYKAASFGN 437
            LD E+  +LK QL K F+   P    +YE EL   L+ ++++ ++W    T G  L NL++ D R   ++ +++  +        QK+ Y I  VGG YLW++++ +   R   D             AR A  +      LY AA+ GN
Sbjct:   27 LDAELVDLLKNQLFKGFTNFHPEFRDKYESELVLALKLILFKLTVWDHAITYGGKLQNLKFIDSRH-SSKLQIQPSV-------IQKLGYGILVVGGGYLWSKIEGYLLARSEDDVATDGTSVRGASAARGALKVANFASLLYSAATLGN 168          

HSP 2 Score: 23.483 bits (49), Expect = 7.339e-11
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  539 VSFELLNRQLVW 574
            VS+E  NRQLVW
Sbjct:  201 VSYEFQNRQLVW 212          

HSP 3 Score: 21.557 bits (44), Expect = 7.339e-11
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 1
Query:  430 LATLLIFLYTGRY 468
            L   + FLYTGRY
Sbjct:  166 LGNFVAFLYTGRY 178          
The following BLAST results are available for this feature:
BLAST of EY680485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PEX2_ARATH1.887e-7164.14Peroxisome assembly protein 2 OS=Arabidopsis thali... [more]
PEX2_DICDI2.504e-1529.07Peroxisome biogenesis factor 2 OS=Dictyostelium di... [more]
PEX2_YARLI7.339e-1129.33Peroxisomal biogenesis factor 2 OS=Yarrowia lipoly... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-011-F01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680485 ID=EY680485; Name=EY680485; organism=Citrus sinensis; type=EST; length=817bp
CTGGAAGATTGGACATTGAAATGTCAGCCATGTTAAAAGAACAGTTGGTT
AAGGTCTTCTCTCTGATGAAGCCAGGAATGTTATTTCAATATGAACCTGA
GCTCGATGCTTTTCTAGAGTTTCTAATTTGGCGGTTTTCAATTTGGGTGG
ATAAGCCGACTCCTGGAAATGCTCTAATGAATTTGAGGTACAGGGATGAA
CGTGCTGTGGAAACAAGAGCAAAAGTCAGAACTGGTTTGGAGGGACCTGG
ACTTACCAATGCCCAGAAGATTTGGTATTGCATTGCCACTGTTGGTGGAC
AGTACCTCTGGGCTCGTTTACAATCATTCTCTGCTTTCCGCAGATGGGGA
GACTCTGAGCAGAGGCCATTGGCTAGGCGAGCATGGATTTTAATACAGCG
GATTGAAGCACTTTACAAGGCTGCCTCATTTGGCAACCCTACTCATATTT
CTTTACACTGGAAGGTATAGGAACCCTCCTTGAAAGAGCCTTTAACAGCA
AGGCTTGTCTATGGGACCCCCTAATATGAATCGAGGCTGTTAGCTTCGAA
TTACTGAATCGGCAGTTAGTGTGGGAATGGAGTTTTCGGAAATTGTAACT
TTTACTTCCTCCCCCTCCTAAACCCCGTCAACTGTTAAAAGGCTTAATTG
GGCCCATTTTTAAAGGGTAAATTCTTCCAACCTTCTAGAAAAGAAAGGTC
CCTTAATTGTGCCACTCTGGCCAAGGCAGTGCAAACCACTCCCATTTTCC
GTGGCCTCCCCCTGGGCAAACATAGGGACGGGGTAATTTACGGGCTTTAA
AAACCGGCGTCTGGCGC
back to top