DR405658

Overview
NameDR405658
Unique NameDR405658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405658_ssr195 microsatellite DR405658_ssr195:195..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:1..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.386e-84
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYKAPSDGK G
Sbjct:    1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWG 148          

HSP 2 Score: 58.5362 bits (140), Expect = 1.386e-84
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHELDYLLF  RDV+VNPNPDEVA+ KYV R
Sbjct:  148 GEHELDYLLFIVRDVNVNPNPDEVADIKYVTR 179          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 2.354e-84
Identity = 134/150 (89.33%), Postives = 139/150 (92.67%), Query Frame = 3
Query:  222 STMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            S MGD  TDAGMDAVQRRLMFEDECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGK G
Sbjct:   73 SAMGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWG 222          

HSP 2 Score: 57.3806 bits (137), Expect = 2.354e-84
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHELDYLLF  RDV+V+PNPDEVA+ KYVN+
Sbjct:  222 GEHELDYLLFIIRDVNVHPNPDEVADVKYVNQ 253          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 7.453e-83
Identity = 131/144 (90.97%), Postives = 137/144 (95.14%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            T DAGMDAVQRRLMFEDECILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGK G
Sbjct:   55 TKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWG 198          

HSP 2 Score: 57.3806 bits (137), Expect = 7.453e-83
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHELDYLLF  RDV V PNPDEVAE KYV+R
Sbjct:  198 GEHELDYLLFIVRDVKVQPNPDEVAEIKYVSR 229          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 9.721e-83
Identity = 133/150 (88.67%), Postives = 140/150 (93.33%), Query Frame = 3
Query:  222 STMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            +TMG+   DAGMDAVQRRLMFEDECILVDEND+VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGK G
Sbjct:   53 TTMGEVV-DAGMDAVQRRLMFEDECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWG 201          

HSP 2 Score: 57.7658 bits (138), Expect = 9.721e-83
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHELDYLLF  RDV+++PNPDEVAE KY+NR
Sbjct:  201 GEHELDYLLFIIRDVNLDPNPDEVAEVKYMNR 232          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 2.161e-82
Identity = 132/144 (91.67%), Postives = 136/144 (94.44%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            + DAGMDAVQRRLMFEDECILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGK G
Sbjct:    4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWG 147          

HSP 2 Score: 55.0694 bits (131), Expect = 2.161e-82
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+DYLLF  RDV + PNPDEVAE KYV+R
Sbjct:  147 GEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSR 178          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 3.076e-81
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            MG+A  DAGMDAVQRRLMF+DECILVDE DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGK G
Sbjct:   54 MGEAA-DAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWG 200          

HSP 2 Score: 60.077 bits (144), Expect = 3.076e-81
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHELDYLLF  RDV+V+PNPDEVAE KYVNR
Sbjct:  200 GEHELDYLLFIVRDVAVHPNPDEVAEIKYVNR 231          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.161e-80
Identity = 128/148 (86.49%), Postives = 137/148 (92.57%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            MG+A  DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYKAPSDGK G
Sbjct:   57 MGEAAADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWG 204          

HSP 2 Score: 58.151 bits (139), Expect = 1.161e-80
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHELDYLLF  RDV ++PNPDEVA+ KYVNR
Sbjct:  204 GEHELDYLLFIVRDVGIHPNPDEVADIKYVNR 235          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.477e-43
Identity = 89/148 (60.14%), Postives = 104/148 (70.27%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            M + +TD  +D  Q +LM E  CILVDENDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA SD   G
Sbjct:    1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWG 145          

HSP 2 Score: 42.3578 bits (98), Expect = 1.477e-43
Identity = 15/32 (46.88%), Postives = 25/32 (78.12%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+DY+L   ++V++NP+P+E+  Y YV +
Sbjct:  145 GEHEIDYILLVKKNVTLNPDPNEIKSYCYVTK 176          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 2.508e-43
Identity = 87/148 (58.78%), Postives = 102/148 (68.92%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG  G
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWG 145          

HSP 2 Score: 43.5134 bits (101), Expect = 2.508e-43
Identity = 15/32 (46.88%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+DY+LF  ++V++NP+P+E+  + YV++
Sbjct:  145 GEHEIDYILFVRKNVTLNPDPNEIKSFCYVSK 176          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.259e-43
Identity = 84/139 (60.43%), Postives = 99/139 (71.22%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG  G
Sbjct:    9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWG 145          

HSP 2 Score: 42.743 bits (99), Expect = 4.259e-43
Identity = 15/32 (46.88%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+DY+L   ++V++NP+P+E+  Y YV++
Sbjct:  145 GEHEIDYILLVRKNVTLNPDPNEIKSYCYVSK 176          
The following BLAST results are available for this feature:
BLAST of DR405658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDI1_CAMAC1.386e-8490.54Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CAMAC2.354e-8489.33Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI2_ARATH7.453e-8390.97Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CLABR9.721e-8388.67Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_ARATH2.161e-8291.67Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI2_CLABR3.076e-8187.84Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLAXA1.161e-8086.49Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_BOVIN1.477e-4360.14Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_MACFA2.508e-4358.78Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_HUMAN4.259e-4360.43Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAI-PNP1247D01 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405658 ID=DR405658; Name=DR405658; organism=Citrus sinensis; type=EST; length=776bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGNGGGGGAGCATGAACTTGACTACTTACTTTTCA
NNNTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTAT
AAATATGTCAACCGGGGAACAGTTAA
back to top