DR405624

Overview
NameDR405624
Unique NameDR405624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2260 contig Csv1_Contig2260:175..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR405624 vs. ExPASy Swiss-Prot
Match: WRK53_ARATH (Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 50/152 (32.89%), Postives = 81/152 (53.29%), Query Frame = 3 
Query:  378 RSTMDRDQNILITELAQGKELAKRLRNHLNPSSSP------------ETREFLVQEILSSYEKALSMLNYSHS----LQSNKPDITMVESPRSFPNTAT----SPRSD-------ASDQDYCKDVV--SKKRKTMPQWTEQVKVTSGTALEG 746
            R  +  +Q  L++EL  G + AK+L+  L  + SP            ET E LV++I+SSYE++L +LN+S S    L      +  V +P S P +      SPRS+       +S+  + +D +  SKKRK +P+W+E+V+++    LEG
Sbjct:    4 RDMLSWEQKTLLSELINGFDAAKKLQARLREAPSPSSSFSSPATAVAETNEILVKQIVSSYERSLLLLNWSSSPSVQLIPTPVTVVPVANPGSVPESPASINGSPRSEEFADGGGSSESHHRQDYIFNSKKRKMLPKWSEKVRISPERGLEG 155
The following BLAST results are available for this feature:
BLAST of DR405624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WRK53_ARATH6.601e-1232.89Probable WRKY transcription factor 53 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247B02 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405624 ID=DR405624; Name=DR405624; organism=Citrus sinensis; type=EST; length=752bp
GGGGGTAGTTCATTTCAGGAAATCAAAAAACACGACTCAGTCAAAAGTTG
ATCTCTCTTCCTTCTTATTTCTGTCCAATATCCTCTACTCTTTCGCCTCA
GCTTCAACTCTCGTTCACTACGAAAGCACTTTTCTTCTTTTCTTAATCTT
CTTCCTTCAAGTAATCAATTCGCATGATCTTGATTACTAGAGCACTTGTG
TAACCGAATAAAACAAAATTCAAGATTTAGAGTGGTTTTGGTCACATCCT
AGCTCACATTTTGGTTCCTTTGCTCGTATGAATTGGACTTGCTAGTGATC
TCTCTGCTCAGACTCGTACGGATTCCGGTACTTAGTGTTTCGTCAATTGG
TTGCTAGGGAATTGTTCAGATATGAAAAGGTCGACGATGGATAGGGATCA
AAATATTCTTATTACTGAGCTAGCACAAGGGAAAGAGCTAGCTAAGCGGC
TTAGGAATCATCTGAATCCATCTTCCTCTCCAGAAACTCGCGAATTCTTA
GTACAAGAGATTCTTTCTTCTTATGAGAAAGCACTTTCAATGCTAAATTA
TAGTCATTCTCTCCAGTCCAATAAGCCCGACATCACCATGGTTGAATCAC
CACGTTCTTTTCCCAACACTGCTACTAGCCCAAGAAGCGATGCTTCTGAT
CAAGACTATTGTAAAGATGTCGTATCCAAGAAGAGAAAGACAATGCCTCA
ATGGACTGAACAAGTAAAGGTTACCTCGGGGACAGCATTGGAAGGGACTC
TT
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