DR405262

Overview
NameDR405262
Unique NameDR405262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405262_ssr100 microsatellite DR405262_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DR405262 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.145e-62
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 1
Query:  160 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVDSGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKHGDGVVGLDNFNNYYDPSLK 555
            MPS+EDELFPSTPGKFKI+RSN   RQ HRCF STSTMFLWALFL+ALTASYLSFQSFVDSGSRY +ASWGGIQWEK VR+SAQIHRSGG+SVLVTGA GFVG+HVSLAL+K GDGVVGLDNFNNYYDPSLK
Sbjct:    1 MPSIEDELFPSTPGKFKIDRSN---RQLHRCFASTSTMFLWALFLIALTASYLSFQSFVDSGSRYLTASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLK 129          
BLAST of DR405262 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.248e-26
Identity = 67/140 (47.86%), Postives = 86/140 (61.43%), Query Frame = 1
Query:  160 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYL--------SFQSFVDSGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKHGDGVVGLDNFNNYYDPSLK 555
            M  L+D   PSTPGK+K ++        H  +   S + LWA   +AL   YL        S ++  DS S   +A +GG  WEK VR SA+    GG++VLVTGA+GFVGTHVS+AL++ GDGV+GLDNFN YYDP LK
Sbjct:    1 MSHLDD--LPSTPGKYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSPSRRNLNDSSS-ISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPKLK 137          
BLAST of DR405262 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.248e-26
Identity = 82/183 (44.81%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  160 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTAS--YLSFQSFVDSGSRYFSA-SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKHGDGVVGLDNFNNYYDPSLKN----VIEMPG----NGD-------------VPFTHANISSAQKEFGY 636
            M  L+D   PSTPGKFK+   +       R  +S + +  W+L    L     Y S  S  DS  R     SWGG  WEK VRSSA++    G+SVLVTGAAGFVGTHVS ALK+ GDGV+GLDNFN+YYD SLK     ++E  G     GD             VPFTH    +AQ    Y
Sbjct:    1 MSHLDD--IPSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPDSSRRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRY 181          
BLAST of DR405262 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.743e-26
Identity = 84/188 (44.68%), Postives = 100/188 (53.19%), Query Frame = 1
Query:  160 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCF--TSTSTMFLWALFLVALTASYLSFQSFVDSGSRYFSA------SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKHGDGVVGLDNFNNYYDPSLKN----VIEMPG----NGD-------------VPFTHANISSAQKEFGY 636
            M  L+D   PSTPGKFK          FHR    +S + +  W+L  V L   +  ++S V S     S       SWGG  WEK VRSSA++    G SVLVTGAAGFVGTHVS ALK+ GDGV+GLDNFN+YYDPSLK     ++E  G     GD             VPFTH    +AQ    Y
Sbjct:    4 MSHLDD--IPSTPGKFK--------PYFHRTRWQSSVAKLAFWSLVFVGLIFIFF-YRSPVSSNPADPSRRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRY 180          
BLAST of DR405262 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.944e-25
Identity = 68/140 (48.57%), Postives = 92/140 (65.71%), Query Frame = 1
Query:  160 MPSLEDELFPSTPGKFKIERSNTMNR-QFHRCFTSTSTMFLWALFLVAL----TASYLSFQSFVDSGSRYFSAS-WGGIQWEKHVRSSAQIHRS--GGMSVLVTGAAGFVGTHVSLALKKHGDGVVGLDNFNNYYDPSLK 555
            M  L+D   PS+PGKFK+E+S+ ++R +F    T  +    + L L++L    +   ++  S  D   R    + +GG  WEK +RSSA+I  S   G++VLVTGAAGFVGTHVS ALK+ GDGV+GLDNFN+YYDPSLK
Sbjct:    1 MSRLDD--IPSSPGKFKMEKSSYLHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSSPSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYDPSLK 138          
BLAST of DR405262 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.181e-22
Identity = 64/140 (45.71%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  208 KIERSNTMNRQFH--RCFTSTSTMFLWALFLVALT-------------------ASYLSFQSFVDSG---SRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKHGDGVVGLDNFNNYYDPSLK 555
            K+ER N+  R+ H  +   ++S +   A  LVAL                    A +L  +SF+ +G   S   S+S GG  WEK VR S+   R  G+SVLVTGAAGFVG+H SLAL+K GDGV+G DNFN+YYDPSLK
Sbjct:   14 KLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSDSRAAAAHHLHRRSFLSTGLFSSSSSSSSIGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLK 153          
The following BLAST results are available for this feature:
BLAST of DR405262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GAE1_ARATH3.145e-6287.12UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE5_ARATH1.248e-2647.86UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
GAE2_ARATH1.248e-2644.81UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE3_ARATH4.743e-2644.68UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE4_ARATH8.944e-2548.57UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE6_ARATH3.181e-2245.71UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O14 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405262 ID=DR405262; Name=DR405262; organism=Citrus sinensis; type=EST; length=649bp
GGGGAGGTGCAGTCCCCTCATTTTGCTCTGCATCTATTACTTTCACACCA
TTTNNATCCAATCCAAAACCAAATCCAACCCGGTTTCACCTTTCCTTCTA
AACAAACAAACCAACCCAGAAAAGGGAAAATAATAAAGATTCGAAGATTC
TAGAGAAAAATGCCGTCTTTAGAAGATGAGCTGTTCCCGTCGACGCCGGG
GAAATTCAAGATTGAAAGATCCAACACTATGAACCGCCAGTTTCACCGGT
GTTTCACCTCAACGAGTACCATGTTCTTGTGGGCTCTTTTCTTGGTTGCT
TTAACGGCGTCGTATTTGAGTTTTCAGTCTTTTGTCGATTCCGGTAGCCG
GTACTTTTCCGCTTCTTGGGGAGGTATCCAGTGGGAGAAACATGTCAGGA
GCTCCGCTCAGATCCATCGGTCTGGTGGGATGTCGGTGCTGGTTACCGGT
GCAGCCGGTTTCGTTGGGACCCACGTGTCTTTGGCTTTAAAGAAACACGG
AGACGGCGTCGTTGGACTCGACAATTTCAATAACTACTACGATCCCTCAT
TGAAGAATGTAATCGAAATGCCTGGAAACGGCGACGTCCCGTTCACGCAT
GCGAATATCAGTTCGGCCCAGAAGGAGTTCGGGTACAGGCCCACGACGG
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