DR405260

Overview
NameDR405260
Unique NameDR405260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405260_ssr192 microsatellite DR405260_ssr192:192..201. BLAST: Citrus ESTs to Prunus persica proteins V1
DR405260_ssr48 microsatellite DR405260_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
DR405260_ssr88 microsatellite DR405260_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8013 contig Csv1_Contig8013:88..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT3_ARATH (Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.510e-42
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 2
Query:  281 SLGLSRGPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSE 637
            ++  + G  W PAEQL  LQYCIHSNP W + ++LAFQHYIVMLGTTVLI++TLV  MGG  GDK RVIQ++LFMSG+NTLLQTL GTRLPTVMG S A+ LPVLSII DYN+G F SE
Sbjct:   26 AMARNMGTTWPPAEQLHHLQYCIHSNPSWHETVVLAFQHYIVMLGTTVLIANTLVSPMGGDPGDKARVIQTILFMSGINTLLQTLIGTRLPTVMGVSFAYVLPVLSIIRDYNNGQFDSE 144          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT2_ARATH (Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.635e-33
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = 2
Query:  314 PAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 610
            P +QLQ L+YCI SNPPW +A+ L F+HYI+ LGT V+I S LVP+MGG  GDK RV+Q+LLF+ G+NTLLQTLFGTRLPTV+G S AF +P++SII+D
Sbjct:   13 PMDQLQGLEYCIDSNPPWGEAIALGFEHYILALGTAVMIPSILVPMMGGDDGDKVRVVQTLLFLQGVNTLLQTLFGTRLPTVIGGSYAFMVPIISIIHD 111          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT1_ARATH (Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.931e-32
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 2
Query:  314 PAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEH 640
            P EQLQ L+YCI SNPPWP+ +LLAFQ+YI+MLGT+  I + LVP MGG  GD+ RVIQ+LLF++G+ TLLQ LFGTRLP V+G S A+ +P+  IIND +    +++H
Sbjct:    8 PMEQLQDLEYCIDSNPPWPETVLLAFQNYILMLGTSAFIPALLVPAMGGSDGDRARVIQTLLFVAGIKTLLQALFGTRLPAVVGGSLAYVVPIAYIINDSSLQKISNDH 116          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT6_ARATH (Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.082e-30
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  314 PAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII 604
            P +QL  + YCI S PPWP+A+LL FQHY+VMLGTTVLI + LVP MGGG+ +K +VIQ++LF++G+NTLLQTLFGTRLP V+G S  F    +SII
Sbjct:   19 PKDQLPNISYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTALVPQMGGGYEEKAKVIQTILFVAGINTLLQTLFGTRLPAVVGASYTFVPTTISII 115          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT5_ARATH (Nucleobase-ascorbate transporter 5 OS=Arabidopsis thaliana GN=NAT5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.592e-29
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 2
Query:  314 PAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII 604
            P EQL  + YCI S PPWP+A+LL FQHY+VMLGTTVLI S LVP MGG + +K ++IQ++LF++GLNTLLQT+FGTRLP V+G S  F    +SI+
Sbjct:   15 PKEQLPDISYCITSPPPWPEAVLLGFQHYLVMLGTTVLIPSALVPQMGGRNEEKAKLIQTILFVAGLNTLLQTVFGTRLPAVIGASYTFVPVTISIM 111          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT7_ARATH (Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.295e-28
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 2
Query:  287 GLSRGPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII 604
            GL   P+    +QL  + YCI S PPWP+A+LL FQHY+VMLGTTVLI + LVP MGGG+ +K +++Q+LLF+SGLNTLLQ+ FGTRLP V+G S  +    LSII
Sbjct:   19 GLEPHPV---KDQLSSISYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTYLVPQMGGGNEEKAKMVQTLLFVSGLNTLLQSFFGTRLPAVIGGSYTYVPTTLSII 121          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT4_ARATH (Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.427e-28
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 2
Query:  320 EQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEH 640
            +QL  +++C+ S+P WP+ ++L FQHYIVMLGTTV+I S LVPLMGGG  +K  VI ++LF+SG+NTLLQ+LFG+RLP VMG S A+ +P L I   Y    +   H
Sbjct:   15 DQLPGVEFCVSSSPNWPEGIVLGFQHYIVMLGTTVIIPSILVPLMGGGDVEKAEVINTVLFVSGINTLLQSLFGSRLPVVMGASYAYLIPALYITFSYRFTYYLHPH 121          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT10_ARATH (Putative nucleobase-ascorbate transporter 10 OS=Arabidopsis thaliana GN=NAT10 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.106e-27
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  320 EQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII 604
            EQL  +QYC++S PPW +A++L FQHY++ LG TVLI S LVPLMGGG+ +K +VIQ+LLF+SGL TL Q+ FGTRLP +   S A+ +P+ SII
Sbjct:   25 EQLPGIQYCVNSPPPWLEAVVLGFQHYLLSLGITVLIPSVLVPLMGGGYAEKVKVIQTLLFVSGLTTLFQSFFGTRLPVIAVASYAYIIPITSII 119          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: LPE1_MAIZE (Nucleobase-ascorbate transporter LPE1 OS=Zea mays GN=LPE1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.106e-27
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 2
Query:  320 EQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII 604
            EQ   L YCI S PPW   +L+ FQHY+VMLGTTVLI++ +VPLMGGGH +K  VIQ++LF+SG+NTLLQ  FGTRLP VM  S  +  P ++II
Sbjct:   16 EQFAGLDYCITSPPPWITTVLVGFQHYLVMLGTTVLIATIIVPLMGGGHAEKAIVIQTILFLSGINTLLQVHFGTRLPAVMSGSYTYIYPAVAII 110          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT9_ARATH (Putative nucleobase-ascorbate transporter 9 OS=Arabidopsis thaliana GN=NAT9 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.280e-27
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 2
Query:  320 EQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII 604
            EQL  +QYC++S PPW +A++L FQHY++ LG TVLI S LVPLMGGG  +K +VIQ+LLF+SGL TL Q+ FGTRLP +   S A+ +P+ SII
Sbjct:   37 EQLPGIQYCVNSPPPWLEAVVLGFQHYLLSLGITVLIPSLLVPLMGGGDAEKVKVIQTLLFVSGLTTLFQSFFGTRLPVIASASYAYIIPITSII 131          
The following BLAST results are available for this feature:
BLAST of DR405260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NAT3_ARATH3.510e-4269.75Nucleobase-ascorbate transporter 3 OS=Arabidopsis ... [more]
NAT2_ARATH6.635e-3365.66Nucleobase-ascorbate transporter 2 OS=Arabidopsis ... [more]
NAT1_ARATH1.931e-3258.72Nucleobase-ascorbate transporter 1 OS=Arabidopsis ... [more]
NAT6_ARATH3.082e-3062.89Nucleobase-ascorbate transporter 6 OS=Arabidopsis ... [more]
NAT5_ARATH7.592e-2961.86Nucleobase-ascorbate transporter 5 OS=Arabidopsis ... [more]
NAT7_ARATH1.295e-2858.49Nucleobase-ascorbate transporter 7 OS=Arabidopsis ... [more]
NAT4_ARATH6.427e-2854.21Nucleobase-ascorbate transporter 4 OS=Arabidopsis ... [more]
NAT10_ARATH7.106e-2758.95Putative nucleobase-ascorbate transporter 10 OS=Ar... [more]
LPE1_MAIZE7.106e-2760.00Nucleobase-ascorbate transporter LPE1 OS=Zea mays ... [more]
NAT9_ARATH9.280e-2758.95Putative nucleobase-ascorbate transporter 9 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405260 ID=DR405260; Name=DR405260; organism=Citrus sinensis; type=EST; length=642bp
GGGGAGGTTCCTTGTACTTTATTTTGTGAAGGAGGAGCTCTCTTCATTAA
TAATAATAAAATGATCTTGAGCTGAGCCTAACCCGAGCTTCTTCTTCTTA
ATTTATTTTTTCCATTTTCGCTTTTCGGCTTCAAGAAGAATAACAAATAC
GCTCGTTTTATTTCTCTGTAAAAGGAGGAAAATAATAACAAAGAGAGAGA
GGGAGAGATAGTAGTTAGAAGAAGAAATGGGGGAAACGGCCGGCCACCAC
CCGCCTCCACCACCGCAGGCGGCACCGCCGTCTCTTGGACTTTCAAGGGG
TCCCATTTGGACTCCAGCCGAGCAACTCCAGCAGCTTCAGTACTGCATCC
ACTCCAATCCTCCATGGCCTCAAGCGCTCTTACTAGCTTTCCAACACTAT
ATCGTAATGCTTGGAACAACAGTCTTAATTTCCAGTACACTGGTGCCTCT
AATGGGTGGGGGCCATGGTGATAAGGGGCGAGTGATTCAATCTTTGTTGT
TCATGTCGGGTCTGAATACGCTGCTTCAAACACTTTTTGGGACAAGACTT
CCTACGGTGATGGGTCCATCCGCTGCTTTCACCCTGCCAGTATTGTCAAT
CATCAATGATTACAATGACGGGAGCTTCACATCTGAGCATGA
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