DR405226

Overview
NameDR405226
Unique NameDR405226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6239 contig Csv1_Contig6239:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.929e-68
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIM WNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.929e-68
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIM WNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.296e-68
Identity = 121/124 (97.58%), Postives = 121/124 (97.58%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MSTPARKRLMRDFKRLQQDPPAGISGAP DNNI  WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.329e-68
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MSTPARKRLMRDFKRLQ DPPAGISGAPQDNNIM WNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS
Sbjct:    1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.807e-65
Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            M+TPA+KRLM DFKRLQ+DPP GISGAPQDNNIMHWNA+IFGP+DTPWDGGTFKLTL FTEDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+SPAN+
Sbjct:    1 MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANA 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.646e-59
Identity = 103/124 (83.06%), Postives = 116/124 (93.55%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP DNNIM WNAVIFGP DTP++ GTFKLT++FTE+YPNKPPTVRFVS++FHPN+YADG ICLDILQN+WSP YDV+AILTSIQSLL DPNPNSPANS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANS 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58
Identity = 102/124 (82.26%), Postives = 118/124 (95.16%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +NNIM WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANS 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58
Identity = 102/124 (82.26%), Postives = 118/124 (95.16%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +NNIM WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANS 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.086e-58
Identity = 102/124 (82.26%), Postives = 115/124 (92.74%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MST AR+RLMRDFKRLQ DPPAGISGAP +NNI+ W AVIFGPDD+ W+G TFKL+LQF+E+YPN  PTV+F+S+MFHPN+YADGSICLDILQNQWSPIYD+AAILTSIQSLLCDPNPNSPANS
Sbjct:    1 MSTAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANS 124
[Close]
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.412e-57
Identity = 98/124 (79.03%), Postives = 116/124 (93.55%), Query Frame = 3 
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANS 124
The following BLAST results are available for this feature:
BLAST of DR405226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC2_ARATH1.929e-6897.58Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH1.929e-6897.58Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_WHEAT4.296e-6897.58Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA7.329e-6896.77Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC3_ARATH5.807e-6590.32Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBCD6_DROME3.646e-5983.06Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2A_MOUSE1.061e-5882.26Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.061e-5882.26Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_DICDI3.086e-5882.26Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBE2B_RAT3.412e-5779.03Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240M17 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240M17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405226 ID=DR405226; Name=DR405226; organism=Citrus sinensis; type=EST; length=692bp
GGGGGACAGAACACAAGAGCAGCAATAAAATATAAAACAGAGTGGGGACG
GGGCTCGACTCAACACACGCAACAGGCCAACCATATCCCAACAATTCACG
TAAAAAAAAGAATTCTGCTTTCTTCTCCGCTGTCTGCAGATTCTCTCTTC
TTTTTTTCTTCTCCACTCGTACTCTCCGTTTTAATCCACTTAGTCTTTTT
CTTCTTTTCTTTCGTTGTATAAATTCAATCAATTCCAACGCTGAAACTTG
AAGCCGCTTAGCTTTCCCTCTTGTTTACCAGTTTCTCGTACCGTCTCCTT
TCAGTTTGTAGGTGGTGACGATGTCGACACCTGCAAGGAAGAGGCTGATG
AGAGATTTTAAAAGGTTGCAGCAAGACCCGCCTGCAGGCATCAGTGGGGC
TCCCCAAGACAACAATATTATGCACTGGAATGCCGTGATATTTGGTCCTG
ATGATACTCCATGGGATGGAGGTACGTTCAAGTTGACCCTTCAGTTTACG
GAGGATTATCCAAACAAACCGCCAACTGTACGATTTGTTTCTAGGATGTT
TCATCCAAATATATATGCCGATGGAAGTATTTGTCTGGATATTTTGCAAA
ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACATCTATTCAG
TCGTTGCTCTGTGATCCCAACCCAAATTCTCCTGCAAATTCA
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