DR405202

Overview
NameDR405202
Unique NameDR405202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:498..1104. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.153e-44
Identity = 92/104 (88.46%), Postives = 92/104 (88.46%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_LOTJA (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.724e-44
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KG+IHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR VADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_SOYBN (30S ribosomal protein S11, chloroplastic OS=Glycine max GN=rps11 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.764e-44
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_GOSHI (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum GN=rps11 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.275e-43
Identity = 90/104 (86.54%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.275e-43
Identity = 90/104 (86.54%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_CARPA (30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.275e-43
Identity = 90/104 (86.54%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_ACOCL (30S ribosomal protein S11, chloroplastic OS=Acorus calamus GN=rps11 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.665e-43
Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KG+IHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_PHAVU (30S ribosomal protein S11, chloroplastic OS=Phaseolus vulgaris GN=rps11 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.175e-43
Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KG+IHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAE+MIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_PHAAN (30S ribosomal protein S11, chloroplastic OS=Phaseolus angularis GN=rps11 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.175e-43
Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KG+IHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAE+MIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_POPTR (30S ribosomal protein S11, chloroplastic OS=Populus trichocarpa GN=rps11 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.710e-43
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGACGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
The following BLAST results are available for this feature:
BLAST of DR405202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_CITSI1.153e-4488.4630S ribosomal protein S11, chloroplastic OS=Citrus... [more]
RR11_LOTJA5.724e-4485.5830S ribosomal protein S11, chloroplastic OS=Lotus ... [more]
RR11_SOYBN9.764e-4485.5830S ribosomal protein S11, chloroplastic OS=Glycin... [more]
RR11_GOSHI1.275e-4386.5430S ribosomal protein S11, chloroplastic OS=Gossyp... [more]
RR11_GOSBA1.275e-4386.5430S ribosomal protein S11, chloroplastic OS=Gossyp... [more]
RR11_CARPA1.275e-4386.5430S ribosomal protein S11, chloroplastic OS=Carica... [more]
RR11_ACOCL1.665e-4384.6230S ribosomal protein S11, chloroplastic OS=Acorus... [more]
RR11_PHAVU2.175e-4382.6930S ribosomal protein S11, chloroplastic OS=Phaseo... [more]
RR11_PHAAN2.175e-4382.6930S ribosomal protein S11, chloroplastic OS=Phaseo... [more]
RR11_POPTR3.710e-4385.5830S ribosomal protein S11, chloroplastic OS=Populu... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240L14 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240L14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405202 ID=DR405202; Name=DR405202; organism=Citrus sinensis; type=EST; length=607bp
GGGATTGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATA
TTTATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACG
TAGGCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGG
GCGTTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACA
GATGTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATT
CAGGGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAA
ATGCTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATG
ATAAAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAGCTATTCGTAG
AAGCGGTATCCTTTTAAATTTCGTACGGGATGTAACCCCTATGCCACACA
ATGGTTGCAGACCCCCTAAAAAAAGACGGGTGTAGAAATAAACATTGAAG
AGATTTCAAGAGAAATAAATGACTCAATGATCTGACAAATAATATTACTA
TGGTTCGAGAGAAAGTAAAAGTATCTACTCGGACACTACAGTGGAAGTGT
GTTGAAT
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