DR405161

Overview
NameDR405161
Unique NameDR405161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405161 vs. ExPASy Swiss-Prot
Match: CT004_MACFA (Uncharacterized protein C20orf4 homolog OS=Macaca fascicularis GN=QtsA-15573 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 2
Query:   83 KMDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIHPGVHFVFYSSSSR-DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKS 496
            +MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMI PG+HF++YSS  + + KE  P +GFF+      + V +W                         E D+ LGPY  +   +W  L+++I+++
Sbjct:    5 QMDPELAKRLFFEGATVVILNMPKGTEFGIDCNSWEVGPKFRGVKMIPPGIHFLYYSSVDKANPKEVGPRMGFFLSLYQRGLTVLRWSTLREEVDLSPAPESEVEAMRANLQELDQFLGPYPYATLKKWISLTNFISEA 143          
BLAST of DR405161 vs. ExPASy Swiss-Prot
Match: CT004_BOVIN (Uncharacterized protein C20orf4 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 2
Query:   83 KMDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIHPGVHFVFYSSSSR-DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKS 496
            +MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMI PG+HF+ YSS  + + +E  P +GFF++     + V +WD                        E D+ LGPY  +   +W  L+++I+++
Sbjct:    5 QMDPELARRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDKANPREVGPRMGFFLNLQQRGLKVLRWDAAREEVDLSPAPEAEVEAMRANLQELDQFLGPYPYTTLKKWISLTNFISEA 143          
BLAST of DR405161 vs. ExPASy Swiss-Prot
Match: CT004_MOUSE (Uncharacterized protein C20orf4 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 46/139 (33.09%), Postives = 78/139 (56.12%), Query Frame = 2
Query:   83 KMDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIHPGVHFVFYSSSSR-DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKS 496
            +MDPE A +L   GAT+++L++P+ T FGID   + VGP F+G+KMI PG+HF++YSS  + + +E  P +GFF+      + V +W+                        + D+ LGPY  +   +W  L+++I+++
Sbjct:    5 QMDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLYYSSVDKANPREVGPRMGFFLSLKQRGLTVLRWNAVQEEVDLSPAPEAEVEAMRANLPDLDQFLGPYPYATLKKWISLTNFISEA 143          
BLAST of DR405161 vs. ExPASy Swiss-Prot
Match: CT004_HUMAN (Uncharacterized protein C20orf4 OS=Homo sapiens GN=C20orf4 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 2
Query:   83 KMDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIHPGVHFVFYSSSSR-DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKS 496
            +MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMI PG+HF+ YSS  + + KE  P +GFF+      + V +W                         E D+ LGPY  +   +W  L+++I+++
Sbjct:    5 QMDPELAKRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDKANPKEVGPRMGFFLSLHQRGLTVLRWSTLREEVDLSPAPESEVEAMRANLQELDQFLGPYPYATLKKWISLTNFISEA 143          
BLAST of DR405161 vs. ExPASy Swiss-Prot
Match: CT004_PONAB (Uncharacterized protein C20orf4 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   83 KMDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIHPGVHFVFYSSSSR-DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKS 496
            +MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+K I PG+HF+ YSS  + + KE  P +GFF+      + V +W                         E D+ LGPY  +   +W  L+++I+++
Sbjct:    5 QMDPELAKRLFFEGATVVILNMPRGTEFGIDYNSWEVGPKFRGVKTIPPGIHFLHYSSVDKANPKEVGPRMGFFLSLHQRGLTVLRWSTLREEVDLSPAPESEVEAMRANLQELDQFLGPYPYATLKKWISLTNFISEA 143          
BLAST of DR405161 vs. ExPASy Swiss-Prot
Match: YQQ2_CAEEL (Uncharacterized protein F10B5.2 OS=Caenorhabditis elegans GN=F10B5.2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 2
Query:   77 GEKMDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIHPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYIT 490
            G  + PE    + ++GA LL L  PQ + FGID + +  G  F G+KMI PGVHFV+ S  S      +P IGFF +    E++V+KW+ +                +       D  L PY    Y  W  L+ +IT
Sbjct:    2 GGALPPEIVDYMYRNGAFLLFLGFPQASEFGIDYKSWKTGEKFMGLKMIPPGVHFVYCSIKS------APRIGFFHNFKAGEILVKKWNTESETFEDEEVPTDQISEKKRQLKNMDSSLAPYPYENYRSWYGLTDFIT 133          
The following BLAST results are available for this feature:
BLAST of DR405161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CT004_MACFA5.910e-1834.53Uncharacterized protein C20orf4 homolog OS=Macaca ... [more]
CT004_BOVIN7.719e-1834.53Uncharacterized protein C20orf4 homolog OS=Bos tau... [more]
CT004_MOUSE1.720e-1733.09Uncharacterized protein C20orf4 homolog OS=Mus mus... [more]
CT004_HUMAN1.720e-1734.53Uncharacterized protein C20orf4 OS=Homo sapiens GN... [more]
CT004_PONAB8.534e-1733.81Uncharacterized protein C20orf4 homolog OS=Pongo a... [more]
YQQ2_CAEEL3.964e-1433.33Uncharacterized protein F10B5.2 OS=Caenorhabditis ... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240J09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240J09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405161 ID=DR405161; Name=DR405161; organism=Citrus sinensis; type=EST; length=634bp
GGGGAACGAAGAGGCTTCTGGACTCCACAGACCACTCTCGAGCCAAGCTC
TGAAATTACTAATTTCATAGAAAAGGGGGGAAAAAATGGACCCAGAAGCG
GCATTAGAGCTCGTAAAGCATGGAGCCACGCTTCTCCTTCTCGATGTTCC
TCAATACACCCTTTTCGGCATTGACACCCAGATGTTTTCAGTGGGGCCTT
CTTTTAAGGGTATCAAGATGATTCATCCTGGAGTTCATTTTGTGTTCTAC
AGCTCATCAAGCAGAGATGGTAAGGAGTTTTCTCCAATCATTGGCTTCTT
CATCGATGCTGGCCCTTCAGAGGTGATTGTTCGTAAGTGGGATCAACAAG
AGGAACGCTTGGTCAAAGTATCAGAAGAGGAGGAAGCAAGATATACTCAA
GCAGTGTGTAGTTTGGAGTTTGATAAACAGCTTGGTCCTTATACTCTCAG
CCAGTATGGAGAATGGAAACGGTTGTCTTCTTATATTACAAAGAGCATCA
TTGAACGGATTGAACCCATTGGAGGAGAAATAACTGTCACAGCTGAATCT
GGAATGATGAAAAACACTCCAAAATCGACAATGGAAAGAGCTCTGGATGA
GCAACTAAAGACTAATAAGTTCGCAGCAAGCGTT
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