DR405133

Overview
NameDR405133
Unique NameDR405133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 9.830e-96
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDK FLADHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKV 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.421e-94
Identity = 168/176 (95.45%), Postives = 173/176 (98.30%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIG+P+YIECSSKTQQNVKAVFDAAIKV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKV 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 344.354 bits (882), Expect = 3.162e-94
Identity = 169/176 (96.02%), Postives = 172/176 (97.73%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPI+TAQGEELRKLIGA  YIECSSKTQQN+KAVFDAAIKV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKV 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.202e-93
Identity = 166/176 (94.32%), Postives = 173/176 (98.30%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKV 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.050e-93
Identity = 163/176 (92.61%), Postives = 174/176 (98.86%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKLDLRDDKQF A+HPGAVPI+TAQGEEL+KLIGAP YIECS+KTQQNVKAVFDAAIKV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKV 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 5.964e-93
Identity = 167/176 (94.89%), Postives = 170/176 (96.59%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ NVK VFDAAIKV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKV 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.017e-92
Identity = 165/176 (93.75%), Postives = 172/176 (97.73%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITTAQGEELRKLI AP YIECSSK+QQNVKAVFDAAI+V
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRV 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 1.735e-92
Identity = 163/176 (92.61%), Postives = 172/176 (97.73%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAI+V
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRV 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.266e-92
Identity = 165/174 (94.83%), Postives = 170/174 (97.70%), Query Frame = 1
Query:  136 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIG+ VYIECSSKTQQNVKAVFDAAIKV
Sbjct:    2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKV 175          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.865e-92
Identity = 162/176 (92.05%), Postives = 172/176 (97.73%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEEL+KLIGAP YIECSSKTQ+NVK VFDAAI+V
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRV 176          
The following BLAST results are available for this feature:
BLAST of DR405133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_LOTJA9.830e-9697.16Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC5_ARATH2.421e-9495.45Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC5_ORYSJ3.162e-9496.02Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_BETVU1.202e-9394.32Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC3_ARATH2.050e-9392.61Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC6_ORYSJ5.964e-9394.89Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RHO1_PEA1.017e-9293.75Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC11_ARATH1.735e-9292.61Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC4_ARATH2.266e-9294.83Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
RAC1_ARATH3.865e-9292.05Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240H19 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240H19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405133 ID=DR405133; Name=DR405133; organism=Citrus sinensis; type=EST; length=657bp
GGGGCTCTCTCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGTACTTGT
TCTGAGTTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAATAAA
GATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGAGGTTCATA
AAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCAT
TTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTG
ACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGG
TTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAGACCATTGAG
CTACCGCGGGGCAGATGTCTTCTTACTTGCATTCTCTCTCATTAGCAAGG
CCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTAT
GCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGGGA
TGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAATTACCACGG
CCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATTGAG
TGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGATGCGGCCAT
CAAGGTG
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