DR405042

Overview
NameDR405042
Unique NameDR405042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405042_ssr247 microsatellite DR405042_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2464 contig Csv1_Contig2464:16..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR405042 vs. ExPASy Swiss-Prot
Match: IQD32_ARATH (Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.455e-35
Identity = 109/281 (38.79%), Postives = 152/281 (54.09%), Query Frame = 2 
Query:   65 MGRS--NSCFKIITC--GSDSAGNDDLDVSESKGSNDKRGWSFRKKSARHRVLSNSVVTETA-SSVKKESLETADVNFQTPSS------VKQSLESTDVSFQTP--------------SSAKKESLELTNVNFQPPNISNVPEKIPTI------------------------------QCIDEKPQFPTPVEPKTSET----IIETDAD---DSPLDESVVIVIQAAVRGILAQRELLKLKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYA 721
            MGRS  +SC ++I+C  G D++ + +    E+K S DKRGWSFRKKS + R L  SVV+ET  +S  +E+LE+A +   +P +       +QS    +   Q P               S  +E  EL +V  Q   I +  E  P I                              + +  + +  + VEP+ SE+    I+  ++D   D  LDESV++VIQAAVRG LA+RELL+ K V+KLQAAVRGHLVR  A+G+LRCVQAIVKMQ +VRAR++
Sbjct:    1 MGRSPASSCLRLISCSGGDDTSADPNSTALENKSSGDKRGWSFRKKSGKQRGLITSVVSETTPASRTRETLESALLKSPSPDNNNVSEKQQQSFSVDEKKSQLPVVTYVAEPVDEKKTQSVIEEKTELLSVEEQ---IDHRTEVSPVIVESKGTETEEDDLIGTELQGPSAADAAKIEEDVTSEVEMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVRARHS 278
The following BLAST results are available for this feature:
BLAST of DR405042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD32_ARATH2.455e-3538.79Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQ... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240D03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405042 ID=DR405042; Name=DR405042; organism=Citrus sinensis; type=EST; length=745bp
GGGGGACGGAGTGAGGTGTGTGCGCCAGGAGGACCAGATAAGGAGAACAA
ACTAACCAAACAAAATGGGAAGATCAAATTCTTGTTTCAAAATTATCACC
TGCGGTAGCGACTCAGCTGGCAACGATGATCTTGATGTCTCCGAGAGCAA
GGGCTCAAATGACAAACGTGGGTGGAGTTTCCGGAAGAAATCTGCCCGGC
ATCGAGTGCTAAGCAACAGTGTGGTAACAGAAACTGCTTCATCTGTAAAG
AAAGAAAGTCTGGAGACGGCTGATGTTAACTTCCAAACCCCTTCATCTGT
AAAGCAGAGTCTGGAGTCCACTGATGTTAGCTTCCAAACTCCTTCATCTG
CAAAGAAGGAGAGTCTGGAGTTGACTAATGTTAATTTTCAACCACCCAAT
ATCTCCAATGTTCCAGAGAAAATCCCCACCATACAGTGCATTGATGAGAA
ACCCCAGTTTCCAACTCCTGTGGAACCGAAAACATCTGAGACCATTATTG
AGACAGATGCAGATGATTCCCCCCTAGATGAGTCTGTTGTTATTGTCATC
CAGGCAGCTGTCAGAGGGATCTTGGCTCAAAGAGAACTCTTAAAGCTTAA
GAATGTGGTTAAGTTGCAAGCTGCTGTACGAGGACACTTGGTTCGGAGGC
ACGCTGTGGGAACCCTACGTTGTGTTCAAGCCATTGTTAAGATGCAAACT
CTTGTTCGTGCTCGCTATGCTTGTCTTGGAAAGGAGCCAGATTGG
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