DR405037

Overview
NameDR405037
Unique NameDR405037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1887 contig Csv1_Contig1887:16..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405037 vs. ExPASy Swiss-Prot
Match: TTC33_DANRE (Tetratricopeptide repeat protein 33 OS=Danio rerio GN=ttc33 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  212 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFDRALAIKP 493
            +G  LAE  +  EAL KW+ A+ L PE+AVL+E K+QVL+ LG+ + A+++A  AT L   W EAW TLGRAQL+ GE + A+ SF  AL + P
Sbjct:   66 EGALLAEQDRNWEALKKWDEAVQLTPEDAVLYEMKSQVLITLGEVFLAVQSAEMATRLRPIWWEAWQTLGRAQLSLGEVELAVRSFQVALHLHP 159          
BLAST of DR405037 vs. ExPASy Swiss-Prot
Match: TTC33_MOUSE (Tetratricopeptide repeat protein 33 OS=Mus musculus GN=Ttc33 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 59/158 (37.34%), Postives = 83/158 (52.53%), Query Frame = 2
Query:   38 WNKNKGNK--NRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFDRALAIKPDSEE 505
            W +  G K    + QQF     D++D      G  L+ +    E  +    KQ +   + +G  LAE+ +++EA+ KW+ AL L P +A L+E K+QVLL L + + A+ AA  A +      EAW TLGRAQL  GE   AI SF  AL I P + E
Sbjct:    6 WKRRIGEKVSKATSQQFEAEAADEKDAAENEDGNWLQASKRRKETLQE-GCKQRSQQLKDEGAQLAENKRYKEAIQKWDEALQLTPGDATLYEMKSQVLLSLHEMFPAVHAAEMAVKRNPHSWEAWQTLGRAQLGLGEIVLAIRSFQIALHIYPMNPE 162          
BLAST of DR405037 vs. ExPASy Swiss-Prot
Match: TTC33_XENLA (Tetratricopeptide repeat protein 33 OS=Xenopus laevis GN=ttc33 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 2
Query:  212 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFDRALAIKPDSEE 505
            +G  LAEDG+ +EAL KW+ A+ L P +A L+E KAQVL+ + + + A++AA  A +    + EAW TLGRAQL+ GE   AI SF   L I P + E
Sbjct:   65 EGGLLAEDGRQKEALTKWDEAIQLTPGDAALYEMKAQVLMGVHEIFPAVQAAETAVQRNPHFVEAWQTLGRAQLSLGEITMAIRSFQIGLHICPANTE 162          
BLAST of DR405037 vs. ExPASy Swiss-Prot
Match: TTC33_HUMAN (Tetratricopeptide repeat protein 33 OS=Homo sapiens GN=TTC33 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 58/166 (34.94%), Postives = 84/166 (50.60%), Query Frame = 2
Query:   38 WNKNKGNKNRSL--QQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALS--------FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFDRALAIKPDSEE 505
            W +  G K   +  QQF     D++D         +  ND+ N        K++ L          + +G +LAE+ ++REA+ KW+ AL L P +A L+E K+QVL+ L + + A+ AA  A +      E+W TLGRAQL  GE   AI SF  AL I P + E
Sbjct:    6 WKRKIGEKVSKVTSQQFEAEAADEKD---------VVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPE 162          
The following BLAST results are available for this feature:
BLAST of DR405037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TTC33_DANRE7.341e-1850.00Tetratricopeptide repeat protein 33 OS=Danio rerio... [more]
TTC33_MOUSE2.136e-1737.34Tetratricopeptide repeat protein 33 OS=Mus musculu... [more]
TTC33_XENLA3.084e-1646.94Tetratricopeptide repeat protein 33 OS=Xenopus lae... [more]
TTC33_HUMAN3.410e-1534.94Tetratricopeptide repeat protein 33 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240C22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240C22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405037 ID=DR405037; Name=DR405037; organism=Citrus sinensis; type=EST; length=715bp
GGGGGAGGGGGAGAGGCCGATAGAGATGAAATTGACGTGGAACAAAAACA
AGGGCAACAAGAATCGGTCACTGCAGCAATTCCCAAATCTTCCTTTTGAC
CAACAAGACCAAGAGCACGGATTAAGTGGTGCAGAGCTCGAAAAGAACGA
TGATAATAACGAACATCAAGAACCCTTCGACGCTAAACAACTTGCCCTAT
CATTCGAAGCCCAAGGCAATAACCTTGCCGAGGATGGAAAATTCCGGGAA
GCACTTGGAAAGTGGGAGGCTGCTCTTAATTTGAGGCCTGAAAATGCGGT
CTTGCATGAGCAGAAAGCACAAGTTTTACTAGAACTTGGGGATGCATGGA
ATGCATTGAAGGCAGCTACTCGAGCTACTGAATTGGAACAATCATGGGCA
GAGGCATGGATAACTCTAGGTAGGGCACAGTTAAACTTTGGGGAGCCTGA
TAAAGCAATCGAAAGCTTTGACAGGGCATTAGCTATCAAGCCTGATTCTG
AGGAGGCTCGAGATGACAGACAGACTGCATTACATCTTGTCAAGAGGAGG
AAGCATCTTCATTTGTCTGGCTTGAGTAATGATGCAAACCGTTTTGTAGT
TGGGGACAAGACAGAAGTCTCCTGAAGCTGCGAGAAAGATGATTAGGAAA
AGTTATCTGGCATCAGAATCCTTGGCCTCTGGAGAACTTAGCTGTGAAAG
TTTGTGATAATTTAC
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