DR405002

Overview
NameDR405002
Unique NameDR405002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405002_ssr13 microsatellite DR405002_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:117..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.759e-23
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 288
            M DTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.336e-19
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  100 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 291
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.641e-18
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 285
            M D CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 285
            M   C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.916e-16
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 288
            M   C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.768e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 288
            M D CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.768e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 288
            M D CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 288
            M D CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR405002 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   91 MPDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 288
            M D CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR405002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA3.759e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC7.336e-1960.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.641e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV5.813e-1656.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO9.916e-1657.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ3.768e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.768e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ3.527e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.340e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240B06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405002 ID=DR405002; Name=DR405002; organism=Citrus sinensis; type=EST; length=567bp
GGGGATCATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTC
TATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGCCGGACA
CCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGA
AGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCAC
CGTTGTTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGT
GCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAA
GCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTG
TGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCT
ACTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGT
TGTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATG
TAATATATGGCCATTGGCCATGACCGTGGCCTTGTGTGCAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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