DR404983

Overview
NameDR404983
Unique NameDR404983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1095..1327. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.782e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  325 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.782e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.782e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.782e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  330 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 381
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.734e-23
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.734e-23
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  306 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.862e-23
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  327 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT_FUCVE (Actin OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            +MKIKVVAPPERKYSVWIGGS+LASL+TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  325 TMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of DR404983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
ACT3_SOYBN7.782e-2496.15Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT3_ORYSJ7.782e-2496.15Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI7.782e-2496.15Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_DAUCA7.782e-2496.15Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACT13_SOLTU1.734e-2394.23Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU1.734e-2394.23Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
ACT7_ARATH3.862e-2394.23Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT_SCHDU8.604e-2392.31Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACT_GOSHI8.604e-2392.31Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT_FUCVE8.604e-2392.31Actin OS=Fucus vesiculosus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240A07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404983 ID=DR404983; Name=DR404983; organism=Citrus sinensis; type=EST; length=233bp
GGGAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGT
TTGGATTGGAGGATCAGTCCTTGCATCCCTCAACACCTTCCAGCAAATGT
GGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGG
AAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCA
TTTAGTTGGTTTTTTGTGTCACGTTTCTCGAAC
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