DR404980

Overview
NameDR404980
Unique NameDR404980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: NUC2_NEUCR (Ankyrin repeat protein nuc-2 OS=Neurospora crassa GN=nuc-2 PE=4 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 52/201 (25.87%), Postives = 104/201 (51.74%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSP--------------PPSHRHCVEA-EADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDKRTGGLLRLLFIQKVL-KQPFFTTEVVSKLIKECESTIAQV 609
            MKFGK++Q++  E +P +   F++YK LKKL+  +S++P              P   +  ++A +A F + ++ E+DK NA +++KE +  I+ K L  + + +    G    R ++         +++    F  ++  L  +   N T  +KILKK+DK      + L++ +V+ K+P F   V+S+L  +  +++ ++
Sbjct:    1 MKFGKQIQKRQLE-VPEYAASFVNYKALKKLIKKLSATPILPPQTDLRRAPGEPLDTQSALQANKATFFFQIDRELDKVNACYVQKEAELKIRLKTLLDKKKALRSRSGGTSRRSTK------FTTLQEGFQQFVNDLNKLQQFVEINGTAFSKILKKWDKTAKSKTKELYLSRVVEKRPAFNPTVISELSDQATTSLQEL 194          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: XPR1_XENTR (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Xenopus tropicalis GN=xpr1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 57/227 (25.11%), Postives = 97/227 (42.73%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPS--------------ETNCKEDMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 657
            MKF + L   I    P WR +++ Y+  K+++       P           R+  + E  F      E+ K N F+ EK  +   +   LQ  LQ  +D    + A P               E     ++ +++     F+  ++LL NY N N+TG  KILKK+DK      G   R+  ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKEMLYAAQDQAPSIEVTDEDTVKRYYAKFEEIFFQTCEKELAKINTFYSEKLAEAQRRSATLQNELQSSLDAQRESSAIPGLRQRRKAVFALTHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVA---PFYTCKKINQLISETETVV-----TNELESGDRQKAMK 216          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: XPR1_XENLA (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Xenopus laevis GN=xpr1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 56/227 (24.67%), Postives = 96/227 (42.29%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPS--------------ETNCKEDMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 657
            MKF + L   I    P WR +++ Y+  K+++       P           R+  + E  F      E+ K N F+ EK  +   +   LQ  LQ  +D    +   P               E     ++ +++     F+  ++LL NY N N+TG  KILKK+DK      G   R+  ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFTEHLSAHIT---PEWRKQYIQYEAFKEMLYAAQDQAPSIEVTDEDTVKRYYAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRSATLQNELQSSLDAQRESSVVPGLRQRRKAVFALTHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVA---PFYTCKKINQLISETETVV-----TNELESGDRQKAMK 216          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: XPR1_DANRE (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Danio rerio GN=xrp1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 55/207 (26.57%), Postives = 91/207 (43.96%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARPSET--------NCKE-DMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTI 600
            MKF + L   I    P WR +++ Y+  K+++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++    G R   T         CK  ++ +++     F+  ++LL NY N N+TG  KILKK+DK      G   R+  ++     PF+T + +++LI E E+ +
Sbjct:    1 MKFTEHLSAHIT---PEWRKQYIQYEAFKEMLYSAQDQAPSIEVTDEDTVKRYYAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQRESSRAAGLRHRRTVFHLSQQERCKHRNIKDLQLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKIFETSRGADWRVAHVEVA---PFYTCKKITQLISETETLV 201          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: XPR1_MUSMC (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Mus musculus castaneus GN=Xpr1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 60/227 (26.43%), Postives = 99/227 (43.61%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGA--------RPSETNCKEDMAEIR--KDIV----NFHGEMVLLVNYSNTNYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 657
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK  +   +   LQ  LQ  +D    + A        +P      E+  + R  KD+      F+  ++LL NY N N+TG  KILKK+DK      G   R++ ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDVQKESSAVTALRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: XPR1_MUSPA (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Mus pahari GN=Xpr1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 57/227 (25.11%), Postives = 97/227 (42.73%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARP----------SETNCKEDMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 657
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++ G    R            E     ++ +++     F+  ++LL NY N N+TG  KILKK+DK      G   R++ ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDVQKESSGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: XPR1_MUSDU (Xenotropic and polytropic retrovirus receptor 1 OS=Mus dunni GN=Xpr1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 57/227 (25.11%), Postives = 97/227 (42.73%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARP----------SETNCKEDMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 657
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++ G    R            E     ++ +++     F+  ++LL NY N N+TG  KILKK+DK      G   R++ ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDVQKESSGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: XPR1_MOUSE (Xenotropic and polytropic retrovirus receptor 1 OS=Mus musculus GN=Xpr1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 57/227 (25.11%), Postives = 97/227 (42.73%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARP----------SETNCKEDMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 657
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++ G    R            E     ++ +++     F+  ++LL NY N N+TG  KILKK+DK      G   R++ ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDVQKESSGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: XPR1_HUMAN (Xenotropic and polytropic retrovirus receptor 1 OS=Homo sapiens GN=XPR1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 57/227 (25.11%), Postives = 96/227 (42.29%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARP----------SETNCKEDMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 657
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++ G    R            E     ++ +++     F+  ++LL NY N N+TG  KILKK+DK      G   R+  ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of DR404980 vs. ExPASy Swiss-Prot
Match: VTC4_YEAST (Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae GN=VTC4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 58/211 (27.49%), Postives = 105/211 (49.76%), Query Frame = 1
Query:   55 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSHRHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQ---RVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNTNYTGLAKILKKYDKRTGGLLRLLFIQKVLKQPFFT---TEVVSKL--IKECESTIAQVFPVDEKEIGRREPTIRVT 663
            MKFG+ L + +   +  +   ++SY  LK    L  +    + +   E E DF+  L  E+DK   F   K  +   + KE+Q+++Q   R++D+  P      E   +E++++I  D+ +       L  +S  NYTG  KI+KK+DK+TG +L+ +F  ++  +PFF     E+V K+  + +   T  +    D    G+++  +R T
Sbjct:    1 MKFGEHLSKSL---IRQYSYYYISYDDLK--TELEDNLSKNNGQWTQELETDFLESLEIELDKVYTFCKVKHSEVFRRVKEVQEQVQHTVRLLDSNNPPTQLDFEI-LEEELSDIIADVHD-------LAKFSRLNYTGFQKIIKKHDKKTGFILKPVFQVRLDSKPFFKENYDELVVKISQLYDIARTSGRPIKGDSSAGGKQQNFVRQT 198          
The following BLAST results are available for this feature:
BLAST of DR404980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NUC2_NEUCR4.152e-1325.87Ankyrin repeat protein nuc-2 OS=Neurospora crassa ... [more]
XPR1_XENTR5.996e-1225.11Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_XENLA1.744e-1124.67Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_DANRE2.976e-1126.57Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_MUSMC3.886e-1126.43Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_MUSPA6.629e-1125.11Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_MUSDU6.629e-1125.11Xenotropic and polytropic retrovirus receptor 1 OS... [more]
XPR1_MOUSE6.629e-1125.11Xenotropic and polytropic retrovirus receptor 1 OS... [more]
XPR1_HUMAN6.629e-1125.11Xenotropic and polytropic retrovirus receptor 1 OS... [more]
VTC4_YEAST6.629e-1127.49Vacuolar transporter chaperone 4 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240A04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404980 ID=DR404980; Name=DR404980; organism=Citrus sinensis; type=EST; length=708bp
GGGGGTCCCAATTGATCTTGTCTTTGATTTTGAATCTTGAGAGACCGAGA
GATCATGAAGTTCGGCAAGAGATTGCAGCAACAGATTGAAGAAACGCTGC
CCGGTTGGCGTGACAAATTTTTATCCTATAAAAGGTTGAAGAAGCTTGTC
AATTTGATCTCTTCTTCGCCTCCTCCATCGCATCGGCACTGTGTCGAAGC
TGAGGCTGACTTCGTTTACTTGCTGAACCACGAGATCGACAAGTTCAATG
CTTTTTTCATGGAGAAAGAAGAGGATTTCATCATCAAGCGAAAGGAATTA
CAACAGAGGCTGCAGAGGGTGATTGATACATGGGGACCAAACGGAGCTCG
ACCTTCAGAGACAAATTGTAAAGAGGATATGGCAGAGATTAGGAAAGATA
TTGTCAATTTCCATGGCGAAATGGTGTTGTTAGTCAATTACAGCAATACC
AATTACACAGGTTTGGCTAAGATATTGAAGAAGTATGATAAGAGAACAGG
CGGATTACTGCGCTTGTTATTCATTCAAAAGGTGTTGAAGCAACCCTTTT
TCACCACTGAGGTTGTTTCGAAACTGATCAAGGAATGCGAAAGCACAATA
GCCCAAGTGTTTCCGGTTGACGAAAAGGAAATAGGAAGAAGAGAACCAAC
AATAAGAGTTACAGGAGAAGGAGTTTTCAGAAACACGGTTGCAGCTCTAT
TGACAATG
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