DR404559

Overview
NameDR404559
Unique NameDR404559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6206 contig Csv1_Contig6206:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR404559 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 2 
Query:  431 QKSMAEDEKEYGLISESGLSGDHDDIENDLELSETETEASRKTTPSKRKFSKLFKAIMDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRM 718
            Q S + DE       E  LS D ++ E   EL   ET+ SRKT   K+  S+LFK I+ AP +SI S L K+ EEGN+++R EIA AM  LR RRM
Sbjct:   91 QGSTSSDE------DEGKLSADEEEEE---ELDLIETDVSRKTVEKKQ--SELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRM 175
The following BLAST results are available for this feature:
BLAST of DR404559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP135_ARATH1.765e-1146.88Pentatricopeptide repeat-containing protein At1g80... [more]
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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243L15 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243L15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404559 ID=DR404559; Name=DR404559; organism=Citrus sinensis; type=EST; length=718bp
GGGGAGGGTTTTTAGGGTTTAAGACCTCACCTCACTTTTTCTCTGTAGGG
TTCGAAGTTCATTTTATCATTTTCTCTCGCTTCAATTGCTCCGTTTCTCT
TTCATTTTCACCATGTGGGCACTCCGTCGAGCTTCAAATCCTCTTAAGAG
TCAGGGATTTGGACTTGGAACTGCTCGTGCCCGTTGCTCAAGATTAGAAG
TATTGTGTGGTTGTGTGGACGATGAAGCTGTTATTCTTGCATCTCCAAGA
GCAGTTTCTGATGGACGTTTACCTTTATTGAGATTTTACCACCAGCCTCA
TGATTGTTCAAATTTCTTCGGTGGGAGGCGTGGCCTTTCCTCACAAGCCG
GGGCAGAAAGCAGTGGAGAAGAAGATGACTTGGAAGAAGGGTTTTCTGAA
CTTGAAACACCCGCTACTGCTGATGCTGTGCAAAAGAGTATGGCCGAGGA
TGAAAAGGAATATGGATTAATTTCTGAGTCTGGACTCTCTGGTGATCATG
ATGATATTGAAAATGATCTCGAGTTATCAGAAACGGAGACCGAGGCAAGT
AGGAAAACTACACCAAGTAAGAGGAAGTTCTCAAAACTGTTCAAAGCCAT
CATGGATGCTCCAGATATTTCTATCCATAGTACTCTTACTAAATATGCTG
AAGAAGGCAATGATTTGAGCCGTGCTGAGATTGCATTAGCCATGGCCAAT
CTTCGTACGCGTCGAATG
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