CX070733

Overview
NameCX070733
Unique NameCX070733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.938e-102
Identity = 186/237 (78.48%), Postives = 203/237 (85.65%), Query Frame = -2
Query:  163 EEVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK*NS 873
            EEVKKI++ LN                  VFL LVK+ LRP FHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLE+RE+GSTM+VVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL AN SPE+AA+TRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+AE+K N+
Sbjct:   18 EEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRNA 254          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 363.229 bits (931), Expect = 1.072e-99
Identity = 184/234 (78.63%), Postives = 201/234 (85.90%), Query Frame = -2
Query:  172 EEVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 873
            EEVKKIV+ LNE Q               VFL LVKS+LR  F VAAQNCWVKKGGAFTGE+SAEMLVNL+IPWVILGHSERR ILNE +EFVGDKVAYAL+QGLKVIACVGETLE+REAGSTM+VVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  N S ++AA TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+K
Sbjct:   18 EEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVK 251          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 357.066 bits (915), Expect = 7.685e-98
Identity = 179/234 (76.50%), Postives = 196/234 (83.76%), Query Frame = -2
Query:  172 EEVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 873
            ++V+KIV  LNEGQ               VFL +VKS LR  FHVAAQNCWVKKGGAFTGE+SAEMLVNL +PWVILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQREAGSTM+VVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +A +K
Sbjct:   18 DQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.920e-97
Identity = 178/234 (76.07%), Postives = 197/234 (84.19%), Query Frame = -2
Query:  172 EEVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 873
            EEVKKIV++LNE +               VFL  VK+ LR  FHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +LNE NEFVGDK AYALSQGLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW+  N   ++A + RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSA +K
Sbjct:   18 EEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVK 251          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 353.214 bits (905), Expect = 1.110e-96
Identity = 178/234 (76.07%), Postives = 196/234 (83.76%), Query Frame = -2
Query:  172 EEVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 873
            ++V KIV +LNEGQ               VFL +VKS LRP   VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQRE+GSTM+VVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKWL AN S E+A +TRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SA +K
Sbjct:   18 DQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 340.502 bits (872), Expect = 7.444e-93
Identity = 172/233 (73.82%), Postives = 191/233 (81.97%), Query Frame = -2
Query:  172 EVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 870
            +V+ IV+ LN GQ               VFL  VK  LRP   VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTMEVVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +A +K
Sbjct:   19 QVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 336.65 bits (862), Expect = 1.075e-91
Identity = 171/234 (73.08%), Postives = 189/234 (80.77%), Query Frame = -2
Query:  172 EEVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 873
            E+V+ IV  LN GQ               VFL +VK+ LRP   VAAQNCWVKKGGAFTGE+SAEML NL +PWVILGHSERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTMEVVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A +K
Sbjct:   18 EQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.716e-89
Identity = 160/190 (84.21%), Postives = 175/190 (92.11%), Query Frame = -2
Query:  172 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 741
            VAAQNCWVKKGGAFTGE+SAEML NL +PWVILGHSERR +LNE NEFVGDKVAYALSQGLKVIACVGETLEQREAG+TMEVVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW   N S E++A+TRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+K
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVK 192          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.784e-70
Identity = 137/235 (58.30%), Postives = 162/235 (68.94%), Query Frame = -2
Query:  172 EEVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAELK 873
            E + K+VS LN                   ++  VKSSL     ++AQNCW+ KGGAFTGEIS E L +L   WVILGHSERR ++ E NEF+G K AYAL+QG+ VIAC+GE LE+REAG T +V   Q KA AD + SW N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG NC ELA Q D+DGFLVGGASLK PEF  I+ S   K
Sbjct:   86 ESITKLVSDLNSATLEADVDVVVAPPFV--YIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAK 318          
BLAST of CX070733 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.043e-70
Identity = 144/236 (61.02%), Postives = 160/236 (67.80%), Query Frame = -2
Query:  172 EEVKKIVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAELK 873
            E V KIV  LNE                 VFL    + L+    VAAQNCWVKKGGAFTGE+SA+ML NL I WVILGHSERR +L E NEFVG K AYA S+GL VIAC+GE LE+REAG T +V   Q K+ A      W N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S   K
Sbjct:   18 ESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAK 253          
The following BLAST results are available for this feature:
BLAST of CX070733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY3.938e-10278.48Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH1.072e-9978.63Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE7.685e-9876.50Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_COPJA2.920e-9776.07Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYSJ1.110e-9676.07Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE7.444e-9373.82Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU1.075e-9173.08Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA1.716e-8984.21Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIC_SPIOL1.784e-7058.30Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIS_STELP3.043e-7061.02Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_18F03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-18F03-K6-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070733 ID=CX070733; Name=CX070733; organism=Citrus sinensis; type=EST; length=874bp
TTTTTTTTTAGGAAACAAAGATAATTAAAAAAGTTTAAAAAAAGGTTTCA
GTTGGTCGCGCTTATCAAAAACAAAAGTAATTCTGAAATTATACCAAACG
TATTCTATATATCCACAAACAGTAAATACTTCATCAGCAAACTGCGCTTG
AAATAAAGCTCAAGAATTTTACTTCAGCTCAGCAGATTTGATGATGTCAA
TGAACTCCGGCTTCAACGAAGCACCACCAACCAAAAATCCGTCAACATCA
GGCTGTGCAGCCAATTCCTTGCAGTTTGCACCATTTACGGATCCTCCGTA
GATGATCCGTGTTGCTGCAGCAATTTCAGGACTGGTGTTTGCAAGAAGCC
ATTTCCTCAGTTCAAAATGTACTTCTTGAGCCTGCGCTGGAGTGGCAACC
TTCCCAGTTCCAATAGCCCACACAGGTTCATAGGCCAAAACAATGTTTGA
CCAGCTTGAGACTCGATCTGCGATTGCTTTAGTTTGTGCAGCAACAACTT
CCATAGTAGATCCTGCTTCACGCTGCTCAAGTGTCTCACCAACACAAGCA
ATCACCTTCAAACCTTGAGAAAGTGCATATGCAACCTTATCCCCAACAAA
CTCATTTAATTCATTCAAAATGAGTCTCCTTTCAGAATGACCAAGAATGA
CCCAAGGAATTTCCAAATTGACGAGCATTTCCGCACTAATCTCACCGGTG
AAAGCACCTCCCTTCTTGACCCAGCAATTCTGTGCCGCAACATGAAAGCC
AGGCCTCAACGAACTCTTCACCAGTCCAAGAAACACAAACGGAGGGCTAA
CAACGACCTCAACGACATCAGAAGATGGAACTTGACCTTCATTGAGTACG
CTCACTATCTTTTTCACTTCTTCA
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