DR404548

Overview
NameDR404548
Unique NameDR404548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404548 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  464 QKSMAEDEKEYGLISESGLSGDHDDIENDLELSETETEASRKTTPSKRKFSKLFKAIMDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQL 772
            Q S + DE       E  LS D ++ E   EL   ET+ SRKT   K+  S+LFK I+ AP +SI S L K+ EEGN+++R EIA AM  LR RRMYG+ALQ+
Sbjct:   91 QGSTSSDE------DEGKLSADEEEEE---ELDLIETDVSRKTVEKKQ--SELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQM 182          
BLAST of DR404548 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 60/199 (30.15%), Postives = 85/199 (42.71%), Query Frame = 2
Query:  179 KSQGFGLGTARARCSRLEVLCGCVDDEAVILASPRAVSDGRLPLLRFYHQPHDCSNFFGGRRGLXXXXXXXXXXXXXXXXXXXXXXXTPATADAVQKSMAEDEKEYGLISESGLSGDHDDIEN-DLELSETETEASRKTTPSKRKFSKLFKAIMDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQL 772
            +SQ   LG   A  S+L++  G   +  + + S   + D    L RFY      S    GRR L                       TP        S +ED +E+        SGD  DIE  +LEL            P  ++ S++FKAI+    +S+ S L K+ E+G D +R E   AM  LR RRM+G+ALQ+
Sbjct:   10 RSQSLRLGACNAVYSKLDIPLG---ERNIAIESNALIHDKHEALPRFYELSWSSST---GRRSLSSDAGAKTTGDDDDLEDKNVDLATPDETS----SDSEDGEEF--------SGDEGDIEGAELELH----------VPESKRPSEMFKAIVSVSGLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQM 180          
The following BLAST results are available for this feature:
BLAST of DR404548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP135_ARATH6.633e-1548.54Pentatricopeptide repeat-containing protein At1g80... [more]
PPR44_ARATH3.406e-1130.15Pentatricopeptide repeat-containing protein At1g15... [more]
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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243L02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243L02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404548 ID=DR404548; Name=DR404548; organism=Citrus sinensis; type=EST; length=774bp
TGTGTTGGTCCCGNNNNNTCGGCCATTACGGCCGGGGAGGGTTTTTAGGG
TTTAAGACCTCACCTCACTTTTTCTCTGTAGGGTTCGAAGTTCATTTTAT
CATTTTCTCTCGCTTCAATTGCTCCGTTTCTCTTTCATTTTCACCATGTG
GGCACTCCGTCGAGCTTCAAATCCTCTTAAGAGTCAGGGATTTGGACTTG
GAACTGCTCGTGCCCGTTGCTCAAGATTAGAAGTATTGTGTGGTTGTGTG
GACGATGAAGCTGTTATTCTTGCATCTCCAAGAGCAGTTTCTGATGGACG
TTTACCTTTATTGAGATTTTACCACCAGCCTCATGATTGTTCAAATTTCT
TCGGTGGGAGGCGTGGCCTTTCCTCACAAGCCGGGGCAGAAAGCAGTGGA
GAAGAAGATGACTTGGAAGAAGGGTTTTCTGAACTTGAAACACCCGCTAC
TGCTGATGCTGTGCAAAAGAGTATGGCCGAGGATGAAAAGGAATATGGAT
TAATTTCTGAGTCTGGACTCTCTGGTGATCATGATGATATTGAAAATGAT
CTCGAGTTATCAGAAACGGAGACCGAGGCAAGTAGGAAAACTACACCAAG
TAAGAGGAAGTTCTCAAAACTGTTCAAAGCCATCATGGATGCTCCAGATA
TTTCTATCCATAGTACTCTTACTAAATATGCTGAAGAAGGCAATGATTTG
AGCCGTGCTGAGATTGCATTAGCCATGGCCAATCTTCGTACGCGTCGNAT
GTACGGGAAAGCCTTGCAGCTCTC
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