CX070717

Overview
NameCX070717
Unique NameCX070717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070717 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    6 ELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 125
            ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct:  218 ELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257
The following BLAST results are available for this feature:
BLAST of CX070717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH3.223e-1490.00Uncharacterized protein At1g47420, mitochondrial O... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_18E07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-18E07-I14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070717 ID=CX070717; Name=CX070717; organism=Citrus sinensis; type=EST; length=341bp
AAACAGAGTTGGGTTCAAAAATGATTTTCCTAAAGATGAGATGTGCCGGC
CTTGGTTCTGAGTGGGGAAAGGTTACTGTTCTTGGAACCTCAGGACTTGC
GGGGTCATATGTTGAACAGAGAGCTTAGCCCATAGCTGAAAGGTTTATTG
TGATTATGGGTTTCTTTACATCTGGAACTTGCTTCTGAGTAGTGGGAGAC
AATTTGTTATACTCACTCCAGCAAAACCGCGGTTGGAATTGCATGGCAGA
TGAATAAAAGCTTCTTTTGTCAGCAGTAACTAAGAATTAATAAATCTGTG
GTTTATCGTGTTTTCATCTGGTTTGGGAAAAAAAAAAAAAA
back to top