CX070714

Overview
NameCX070714
Unique NameCX070714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.713e-27
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 174
            VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK
Sbjct:  162 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 219
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_DRANE (30S ribosomal protein S3, chloroplastic OS=Draba nemorosa GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.743e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_ARAHI (30S ribosomal protein S3, chloroplastic OS=Arabis hirsuta GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.743e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_PLAOC (30S ribosomal protein S3, chloroplastic OS=Platanus occidentalis GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  161 VQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 217
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_NASOF (30S ribosomal protein S3, chloroplastic OS=Nasturtium officinale GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_LOBMA (30S ribosomal protein S3, chloroplastic OS=Lobularia maritima GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_LEPVR (30S ribosomal protein S3, chloroplastic OS=Lepidium virginicum GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_CAPBU (30S ribosomal protein S3, chloroplastic OS=Capsella bursa-pastoris GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_ARATH (30S ribosomal protein S3, chloroplastic OS=Arabidopsis thaliana GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
The following BLAST results are available for this feature:
BLAST of CX070714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_CITSI7.713e-27100.0030S ribosomal protein S3, chloroplastic OS=Citrus ... [more]
RR3_DRANE2.743e-2492.9830S ribosomal protein S3, chloroplastic OS=Draba n... [more]
RR3_ARAHI2.743e-2492.9830S ribosomal protein S3, chloroplastic OS=Arabis ... [more]
RR3_PLAOC3.583e-2492.9830S ribosomal protein S3, chloroplastic OS=Platanu... [more]
RR3_OLIPU3.583e-2492.9830S ribosomal protein S3, chloroplastic OS=Olimara... [more]
RR3_NASOF3.583e-2492.9830S ribosomal protein S3, chloroplastic OS=Nasturt... [more]
RR3_LOBMA3.583e-2492.9830S ribosomal protein S3, chloroplastic OS=Lobular... [more]
RR3_LEPVR3.583e-2492.9830S ribosomal protein S3, chloroplastic OS=Lepidiu... [more]
RR3_CAPBU3.583e-2492.9830S ribosomal protein S3, chloroplastic OS=Capsell... [more]
RR3_ARATH3.583e-2492.9830S ribosomal protein S3, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_18E05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-18E05-I10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070714 ID=CX070714; Name=CX070714; organism=Citrus sinensis; type=EST; length=781bp
GTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGCGCGCCGAATG
GATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCTAAAATTGATT
ATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGGAATCAAAATT
TGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTCTTTAGAGCCC
CCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTTTTTATCTTCA
ATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTTGAATAAAAAT
TCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAGTGTGCGACTC
GTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCGTCCTGTAGTA
TGAACTAATAACTATAGCACTAATAACCAACTCATTGCTTCGTATTATCT
GAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATATCGTTGTAGC
AACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTAGGTTGTGAAG
TTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAATGGAAGGATG
AGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCCAATATGTAAG
GTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCATCAATAATGAT
TCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAAATCAAGAGCC
CCGAGCCAATAAAAACTGAAGAAAATTGACT
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