CX070713
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 3.828e-65 Identity = 122/133 (91.73%), Postives = 122/133 (91.73%), Query Frame = -3 Query: 416 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 814 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN KMPIRTQFIISG Sbjct: 4 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFIISG 136
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_VIGUN (50S ribosomal protein L16, chloroplastic (Fragment) OS=Vigna unguiculata GN=rpl16 PE=3 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 4.679e-63 Identity = 117/137 (85.40%), Postives = 123/137 (89.78%), Query Frame = -3 Query: 416 TINYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 826 TINYNP+RTRFRKQHRGRMKGISYRGN+ICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG PEYWVAVVKPG+ILYEM GV EN KMPIRTQFIISG Sbjct: 1 TINYNPQRTRFRKQHRGRMKGISYRGNNICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIISG 137
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_GOSBA (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 6.111e-63 Identity = 118/133 (88.72%), Postives = 121/133 (90.98%), Query Frame = -3 Query: 416 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 814 +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN KMPI+TQFIISG Sbjct: 3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIVASKMPIKTQFIISG 135
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_VITVI (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera GN=rpl16 PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 7.981e-63 Identity = 118/133 (88.72%), Postives = 120/133 (90.23%), Query Frame = -3 Query: 416 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 814 +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAEN KMPIRTQFIISG Sbjct: 3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.778e-62 Identity = 116/133 (87.22%), Postives = 119/133 (89.47%), Query Frame = -3 Query: 416 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 814 +PKRTRFRK HRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKP+T+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV EN KMPIRTQFIISG Sbjct: 3 SPKRTRFRKHHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPITVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKAIAIAASKMPIRTQFIISG 135
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_EUCGG (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl16 PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.778e-62 Identity = 117/133 (87.97%), Postives = 120/133 (90.23%), Query Frame = -3 Query: 416 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 814 +PKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAEN KMPIRTQFIISG Sbjct: 3 SPKRTRFRKQHRGRMKGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_HELAN (50S ribosomal protein L16, chloroplastic OS=Helianthus annuus GN=rpl16 PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.322e-62 Identity = 116/136 (85.29%), Postives = 119/136 (87.50%), Query Frame = -3 Query: 416 INYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 823 +NYNPKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN KMPIR QFIISG Sbjct: 1 MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISIAASKMPIRAQFIISG 136
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_GUIAB (50S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica GN=rpl16 PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.322e-62 Identity = 116/136 (85.29%), Postives = 119/136 (87.50%), Query Frame = -3 Query: 416 INYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 823 +NYNPKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN KMPIR QFIISG Sbjct: 1 MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISIAASKMPIRAQFIISG 136
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_GOSHI (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum GN=rpl16 PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.322e-62 Identity = 117/133 (87.97%), Postives = 120/133 (90.23%), Query Frame = -3 Query: 416 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 814 +PKR RFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN KMPI+TQFIISG Sbjct: 3 SPKRNRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIKTQFIISG 135
BLAST of CX070713 vs. ExPASy Swiss-Prot
Match: RK16_CARPA (50S ribosomal protein L16, chloroplastic OS=Carica papaya GN=rpl16 PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.322e-62 Identity = 116/133 (87.22%), Postives = 120/133 (90.23%), Query Frame = -3 Query: 416 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 814 +PKRTRFRKQHRGR+KGISYRGN ICFGRYALQALEP WITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN KMPI+TQFIISG Sbjct: 3 SPKRTRFRKQHRGRLKGISYRGNRICFGRYALQALEPTWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARRAISIAASKMPIKTQFIISG 135 The following BLAST results are available for this feature:
BLAST of CX070713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070713 ID=CX070713; Name=CX070713; organism=Citrus sinensis; type=EST; length=873bpback to top |