DR404533

Overview
NameDR404533
Unique NameDR404533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR404533_ssr369 microsatellite DR404533_ssr369:369..380. BLAST: Citrus ESTs to Prunus persica proteins V1
DR404533_ssr457 microsatellite DR404533_ssr457:457..468. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13669 contig Csv1_Contig13669:1..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404533 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.362e-28
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 1
Query:  127 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 306
            DCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of DR404533 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:  127 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 306
            DCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   39 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of DR404533 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.013e-23
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  127 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 306
            DCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of DR404533 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.547e-23
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  127 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 306
            DCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of DR404533 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 28/60 (46.67%), Postives = 31/60 (51.67%), Query Frame = 1
Query:  127 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 306
            DC   C  RC  +S    C   C  CCA C CVP G  GN + CPCY N  T  G+ KCP
Sbjct:   37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of DR404533 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 29/60 (48.33%), Postives = 32/60 (53.33%), Query Frame = 1
Query:  127 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 306
            DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   53 DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of DR404533 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 1
Query:  130 CGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 306
            C   C+ RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
The following BLAST results are available for this feature:
BLAST of DR404533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SNAK2_SOLTU1.362e-2883.33Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH1.079e-2578.33Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH5.013e-2371.67Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH6.547e-2370.00Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
RSI1_SOLLC4.402e-1146.67Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GAST1_SOLLC4.402e-1148.33Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
SNAK1_SOLTU5.749e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243K06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243K06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404533 ID=DR404533; Name=DR404533; organism=Citrus sinensis; type=EST; length=578bp
GGGGGCACAAAGAAGAGAAGCAGACACTAAGCATAACTAATTGTAAGCCA
TGGCCATCTCCAAAGCTCTTATTGCTTCAGTCCTCCTCTCACTTGTTGTT
TTTCATCTCGTTGAAGCTGAGCATACGACTGTGGAGGTGCATGCCAGGCC
AGGTGCCGATTATCGTCGAGGCCAAACCTGTGCCACAGGGCATGTGGTAC
CTGCTGCGCCCGCTGCAATTGTGTTCCTCCAGGCACTGCAGGCAACACTG
AGGTCTGCCCTTGCTACGCCAATATGACCACCCACCACGGCAGACGCAAG
TGCCCTTGAAATATTTTAAGTTGAAACGACGTCGTCTACTTCTTAATTAA
TTTTTTTGGAGCTTCTATTCTCTCTCTCTCTATGTATAAATATGTGCGTG
TGCGTGTGCGTGTGTTGCCTGTGGCCAGAAAAACAGAGTTGATCCATATT
CCCATGAATAAATAAATAAATCCATTTCATGTTACTTATTGTGGATACAT
AAGTTTCCAGAGAATAATAATAAGAGGCTTCTTCTCCTTTTAAATTTTCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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