DR404525 | Citrus Genome Database

Overview


Name	DR404525
Unique Name	DR404525
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	417

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:888..1304.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_WHEAT (Photosystem II reaction center protein I OS=Triticum aestivum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_VITVI (Photosystem II reaction center protein I OS=Vitis vinifera GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_TOBAC (Photosystem II reaction center protein I OS=Nicotiana tabacum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SPIOL (Photosystem II reaction center protein I OS=Spinacia oleracea GN=psbI PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SOYBN (Photosystem II reaction center protein I OS=Glycine max GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SORBI (Photosystem II reaction center protein I OS=Sorghum bicolor GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SOLTU (Photosystem II reaction center protein I OS=Solanum tuberosum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SOLLC (Photosystem II reaction center protein I OS=Solanum lycopersicum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SOLBU (Photosystem II reaction center protein I OS=Solanum bulbocastanum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SINAL (Photosystem II reaction center protein I OS=Sinapis alba GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of DR404525 vs. ExPASy Swiss-Prot

BLAST of DR404525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
PSBI_WHEAT	2.731e-13	100.00	Photosystem II reaction center protein I OS=Tritic...	[more]
PSBI_VITVI	2.731e-13	100.00	Photosystem II reaction center protein I OS=Vitis ...	[more]
PSBI_TOBAC	2.731e-13	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]
PSBI_SPIOL	2.731e-13	100.00	Photosystem II reaction center protein I OS=Spinac...	[more]
PSBI_SOYBN	2.731e-13	100.00	Photosystem II reaction center protein I OS=Glycin...	[more]
PSBI_SORBI	2.731e-13	100.00	Photosystem II reaction center protein I OS=Sorghu...	[more]
PSBI_SOLTU	2.731e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLLC	2.731e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLBU	2.731e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SINAL	2.731e-13	100.00	Photosystem II reaction center protein I OS=Sinapi...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAE-PNP1243J20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243J20 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR404525 ID=DR404525; Name=DR404525; organism=Citrus sinensis; type=EST; length=417bp
GGGGAATCTATTCTCNTTTTTCCTTATTCCCCAAAAACCTGATTTGGANN
NTGTGTAANNCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA