CX070602

Overview
NameCX070602
Unique NameCX070602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.621e-66
Identity = 145/214 (67.76%), Postives = 162/214 (75.70%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGVQMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPGLMAADVNAMVSIPSSKSPFTTTSD---SKGAGGKSKITCAKDVFFSAFSSPMASGETASLS------YPRMAVAGAKPTFFAPRMVEKV 745
            RALRQFTL  GKSAGRNSSGRIT+FHRGGGSKRL RRIDLKR+TSS+GIVE +EYDPNRSS IAPVRWI+G    QKK NTIE+F PP  RK  EPTT  ISG FSFSFL   VD+RKVA FSPGLMAA V  +V +P+   P +++     SKGAG  S  T  KDVFFSAFSSP A  ETASL+      +PR+AVAGAKP FFAPRM +KV
Sbjct:    7 RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIKG--GCQKKMNTIEKFAPP--RKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMAAYV--VVGLPTGMPPLSSSKSAFASKGAG--STKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKV 212          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.186e-37
Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 505
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.186e-37
Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 505
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.186e-37
Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 505
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.928e-28
Identity = 89/205 (43.41%), Postives = 108/205 (52.68%), Query Frame = 2
Query:  131 RALRQFTLG-KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGVQMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFL---SQNVDQRKVASFSPGLMAADVNAMVSIPSSKSPFTTTSDSKGAGGKSKITCAKDVFFSAFSSPMASGETASLSYPRMAVAGAKPTFFAPRM 733
            +AL+Q T   K  SAGRNSSGRIT+FHRGGGSKRLQR+ID KR+TSS+GIVER+EYDPNRSSWIA VRWIEGV    K+    +         FF          FSFS L   +Q +   K  +  P     + + ++           T D +          AK+V      S         L  P +AVAGAKP FFA RM
Sbjct:    9 KALKQLTFHLKRNSAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDPNRSSWIALVRWIEGVLRPGKRLAFSKANSRREKNMFF------FGLLFSFSSLPRQAQRIKYEKTRALRPCEQILESSWVLG----------TRDLR----------AKEVSLGPLGS--------FLGLPSIAVAGAKPAFFAFRM 179          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            R L+  T G  K+ GRN  GRIT +HRGGG K+L R ID KR    I  +VER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGMSKTGGRNQQGRITSWHRGGGHKKLYRVIDFKRKKIDIFAVVERIEYDPNRTAFIALIKYDDG 99          
The following BLAST results are available for this feature:
BLAST of CX070602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RM02_ARATH4.621e-6667.7660S ribosomal protein L2, mitochondrial OS=Arabido... [more]
RM02_ORYSJ1.186e-3770.6360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI1.186e-3770.6360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA1.186e-3770.6360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO2.928e-2843.4160S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RL2_RICM51.560e-1352.7850S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RICFE1.560e-1352.7850S ribosomal protein L2 OS=Rickettsia felis GN=rp... [more]
RL2_RICCN1.560e-1352.7850S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE1.560e-1352.7850S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_RICTY2.037e-1351.3950S ribosomal protein L2 OS=Rickettsia typhi GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17G11-M21-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070602 ID=CX070602; Name=CX070602; organism=Citrus sinensis; type=EST; length=748bp
CTAGACACCCTTTTTTCACTCGGTCACCGCCGAATCCGCGGCAGCCATTC
AGAGTATCTCCGGAGTAGGGGCTAATTTGTAAGGGAATCGAATGGGTACG
AAACAGGCAATGACAAAATTTAAAGAGGTGAGAGCACTGAGACAATTCAC
TTTGGGTAAAGGGAAGTCCGCTGGTAGGAACTCCTCGGGGCGTATTACGA
TTTTTCACCGGGGGGGTGGTTCGAAGCGATTGCAGCGAAGAATTGATCTG
AAACGTACCACTTCCTCTATTGGTATTGTTGAAAGGGTTGAATATGACCC
TAATCGTTCCTCTTGGATCGCTCCTGTACGATGGATCGAAGGGGTTCAGA
TGCAGCAGAAGAAGTGCAACACCATAGAAGAGTTTGATCCGCCGCCGCTA
CGTAAGTTCTTCGAACCTACCACCGCCGCCATCAGCGGCAAATTTTCGTT
CTCTTTCCTCTCCCAGAATGTGGATCAAAGAAAGGTAGCTTCCTTCTCAC
CTGGACTGATGGCGGCTGATGTAAATGCCATGGTTAGCATTCCTAGTTCG
AAGAGCCCCTTTACGACTACTAGTGATAGCAAGGGTGCAGGAGGAAAAAG
TAAAATAACTTGCGCAAAGGATGTCTTCTTTTCTGCATTCTCATCTCCAA
TGGCCAGTGGAGAGACTGCCTCCCTTTCCTACCCTAGGATGGCAGTAGCT
GGAGCGAAGCCCACTTTCTTCGCCCCTCGAATGGTAGAGAAAGTCGGA
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