CX070602
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 4.621e-66 Identity = 145/214 (67.76%), Postives = 162/214 (75.70%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGVQMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPGLMAADVNAMVSIPSSKSPFTTTSD---SKGAGGKSKITCAKDVFFSAFSSPMASGETASLS------YPRMAVAGAKPTFFAPRMVEKV 745 RALRQFTL GKSAGRNSSGRIT+FHRGGGSKRL RRIDLKR+TSS+GIVE +EYDPNRSS IAPVRWI+G QKK NTIE+F PP RK EPTT ISG FSFSFL VD+RKVA FSPGLMAA V +V +P+ P +++ SKGAG S T KDVFFSAFSSP A ETASL+ +PR+AVAGAKP FFAPRM +KV Sbjct: 7 RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIKG--GCQKKMNTIEKFAPP--RKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMAAYV--VVGLPTGMPPLSSSKSAFASKGAG--STKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKV 212
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.186e-37 Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 505 RALR FTL GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV +Q+K TIEEF P RK E TTA I FSFS LS + Q + AS S G Sbjct: 8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.186e-37 Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 505 RALR FTL GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV +Q+K TIEEF P RK E TTA I FSFS LS + Q + AS S G Sbjct: 8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.186e-37 Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 505 RALR FTL GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV +Q+K TIEEF P RK E TTA I FSFS LS + Q + AS S G Sbjct: 8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.928e-28 Identity = 89/205 (43.41%), Postives = 108/205 (52.68%), Query Frame = 2 Query: 131 RALRQFTLG-KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGVQMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFL---SQNVDQRKVASFSPGLMAADVNAMVSIPSSKSPFTTTSDSKGAGGKSKITCAKDVFFSAFSSPMASGETASLSYPRMAVAGAKPTFFAPRM 733 +AL+Q T K SAGRNSSGRIT+FHRGGGSKRLQR+ID KR+TSS+GIVER+EYDPNRSSWIA VRWIEGV K+ + FF FSFS L +Q + K + P + + ++ T D + AK+V S L P +AVAGAKP FFA RM Sbjct: 9 KALKQLTFHLKRNSAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDPNRSSWIALVRWIEGVLRPGKRLAFSKANSRREKNMFF------FGLLFSFSSLPRQAQRIKYEKTRALRPCEQILESSWVLG----------TRDLR----------AKEVSLGPLGS--------FLGLPSIAVAGAKPAFFAFRM 179
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13 Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343 R L+ T G K+ GRN+ GRIT +HRGGG K+L R ID KR I IVER+EYDPNR+++IA +++ +G Sbjct: 28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13 Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343 R L+ T G K+ GRN+ GRIT +HRGGG K+L R ID KR I IVER+EYDPNR+++IA +++ +G Sbjct: 28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13 Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343 R L+ T G K+ GRN+ GRIT +HRGGG K+L R ID KR I IVER+EYDPNR+++IA +++ +G Sbjct: 28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13 Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343 R L+ T G K+ GRN+ GRIT +HRGGG K+L R ID KR I IVER+EYDPNR+++IA +++ +G Sbjct: 28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 2 Query: 131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343 R L+ T G K+ GRN GRIT +HRGGG K+L R ID KR I +VER+EYDPNR+++IA +++ +G Sbjct: 28 RPLKSLTKGMSKTGGRNQQGRITSWHRGGGHKKLYRVIDFKRKKIDIFAVVERIEYDPNRTAFIALIKYDDG 99 The following BLAST results are available for this feature:
BLAST of CX070602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070602 ID=CX070602; Name=CX070602; organism=Citrus sinensis; type=EST; length=748bpback to top |