CX070601
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 5.096e-48 Identity = 112/181 (61.88%), Postives = 124/181 (68.51%), Query Frame = -3 Query: 360 SAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR-SLPAKP----------------KDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTVNLLPS*QN 824 SAFSSP A ETASL++ PR+AVAGAKP FFAPRM +KV RGK+T SLCE+QK R S WAHRIK KA LSWQ FRRQDTLG+VGAA H KSKPKTD+ +LPAKP KDGAC+V PVTYIIASHQLEAGKMV+N D SKPST + L S QN Sbjct: 169 SAFSSPKAKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKV---------RGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPVTYIIASHQLEAGKMVMNCDWSKPSTSSFLQSAQN 340
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 4.296e-43 Identity = 113/240 (47.08%), Postives = 130/240 (54.17%), Query Frame = -3 Query: 291 SAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTVNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 824 S+ SSP+A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 114 SSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 4.296e-43 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -1 Query: 224 SYRYETLGLNSIIGNCIPL 280 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 4.296e-43 Identity = 113/240 (47.08%), Postives = 130/240 (54.17%), Query Frame = -3 Query: 291 SAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTVNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 824 S+ SSP+A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 114 SSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 4.296e-43 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -1 Query: 224 SYRYETLGLNSIIGNCIPL 280 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 4.296e-43 Identity = 113/240 (47.08%), Postives = 130/240 (54.17%), Query Frame = -3 Query: 291 SAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTVNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 824 S+ SSP+A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 114 SSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 4.296e-43 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -1 Query: 224 SYRYETLGLNSIIGNCIPL 280 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 9.635e-12 Identity = 58/153 (37.91%), Postives = 78/153 (50.98%), Query Frame = -3 Query: 384 LSYPRMAVAGAKPTFFAPRMV--EKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSW-QGFRRQDTLGIVGAAEHNKSKPKTD------------RSLPAKPKDGACRV-----PVTYIIASHQLEAGKMVVNYDGSKPSTV 782 L P +AVAGAKP FFA RM + G + RG+NT S E Q+W+ S A R K LSW QG + ++ L ++ A + K + + R+L A G+ RV P TYI+AS LE G V+N+ GSKPST+ Sbjct: 160 LGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQSG--APRRK-SLVLSWSQGPKARNGL-MISAHDIGKKDRRPEMAGPHTIPEHAPRALHAVGPSGSGRVLRTSEPFTYILASENLEVGNTVMNFHGSKPSTL 308 HSP 2 Score: 20.4014 bits (41), Expect = 9.635e-12 Identity = 8/30 (26.67%), Postives = 13/30 (43.33%), Query Frame = -1 Query: 224 WMGHSAGLTAFSYRYETLGLNSIIGNCIPL 313 W+ + +Y ++GNCIPL Sbjct: 336 WLHPRGDYASSENKYILDSYYQMVGNCIPL 365 The following BLAST results are available for this feature:
BLAST of CX070601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX070601 ID=CX070601; Name=CX070601; organism=Citrus sinensis; type=EST; length=826bpback to top |