CX070601

Overview
NameCX070601
Unique NameCX070601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.096e-48
Identity = 112/181 (61.88%), Postives = 124/181 (68.51%), Query Frame = -3
Query:  360 SAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR-SLPAKP----------------KDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTVNLLPS*QN 824
            SAFSSP A  ETASL++      PR+AVAGAKP FFAPRM +KV         RGK+T SLCE+QK R  S  WAHRIK KA LSWQ FRRQDTLG+VGAA H KSKPKTD+ +LPAKP                KDGAC+V   PVTYIIASHQLEAGKMV+N D SKPST + L S QN
Sbjct:  169 SAFSSPKAKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKV---------RGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPVTYIIASHQLEAGKMVMNCDWSKPSTSSFLQSAQN 340          
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.296e-43
Identity = 113/240 (47.08%), Postives = 130/240 (54.17%), Query Frame = -3
Query:  291 SAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTVNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 824
            S+ SSP+A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  114 SSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 4.296e-43
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -1
Query:  224 SYRYETLGLNSIIGNCIPL 280
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.296e-43
Identity = 113/240 (47.08%), Postives = 130/240 (54.17%), Query Frame = -3
Query:  291 SAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTVNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 824
            S+ SSP+A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  114 SSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 4.296e-43
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -1
Query:  224 SYRYETLGLNSIIGNCIPL 280
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.296e-43
Identity = 113/240 (47.08%), Postives = 130/240 (54.17%), Query Frame = -3
Query:  291 SAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTVNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 824
            S+ SSP+A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  114 SSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 4.296e-43
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -1
Query:  224 SYRYETLGLNSIIGNCIPL 280
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CX070601 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.635e-12
Identity = 58/153 (37.91%), Postives = 78/153 (50.98%), Query Frame = -3
Query:  384 LSYPRMAVAGAKPTFFAPRMV--EKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSW-QGFRRQDTLGIVGAAEHNKSKPKTD------------RSLPAKPKDGACRV-----PVTYIIASHQLEAGKMVVNYDGSKPSTV 782
            L  P +AVAGAKP FFA RM     + G +     RG+NT S  E Q+W+  S   A R K    LSW QG + ++ L ++ A +  K   + +            R+L A    G+ RV     P TYI+AS  LE G  V+N+ GSKPST+
Sbjct:  160 LGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQSG--APRRK-SLVLSWSQGPKARNGL-MISAHDIGKKDRRPEMAGPHTIPEHAPRALHAVGPSGSGRVLRTSEPFTYILASENLEVGNTVMNFHGSKPSTL 308          

HSP 2 Score: 20.4014 bits (41), Expect = 9.635e-12
Identity = 8/30 (26.67%), Postives = 13/30 (43.33%), Query Frame = -1
Query:  224 WMGHSAGLTAFSYRYETLGLNSIIGNCIPL 313
            W+       +   +Y       ++GNCIPL
Sbjct:  336 WLHPRGDYASSENKYILDSYYQMVGNCIPL 365          
The following BLAST results are available for this feature:
BLAST of CX070601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RM02_ARATH5.096e-4861.8860S ribosomal protein L2, mitochondrial OS=Arabido... [more]
RM02_ORYSJ4.296e-4347.0860S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI4.296e-4347.0860S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA4.296e-4347.0860S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO9.635e-1237.9160S ribosomal protein L2, mitochondrial OS=Marchan... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_17G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17G11-M21-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070601 ID=CX070601; Name=CX070601; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTGGCAGATACTTGCTTGTAACCATTTAAGTAAATTAGTTTGAA
AACAACTAATTATTGATGGAATTGAAGAAAAACTAAGTACATTAAGAAAT
TTGAAAGAAAGAATAGAAGGGATACTGATAGAAGAATAAGTATTCCTTTT
CTTTCCGTCTTATCAGAGGGAAGGGGTCCTCTTCATTGAAAAAGGGGAAA
GGAGTTACACAAATGTGAGGGTCTAATGGTATGCAGTTTCCAATTATAGA
ATTTAGACCAAGTGTCTCATACCTATAACTAAAAGCAGTCAGGCCAGCTG
AATGCCCCATCCACTCGGCCGTTCTTTGCTGTCTGAATAAAGTCTTAGTG
TAGATAGGCATTCTGTCAAGATGGCAATAAGTTAACGGTTGAAGGTTTGG
ACCCATCATAATTCACCACCATTTTGCCTGCTTCCAATTGATGACTGGCT
ATTATATAAGTGACAGGTACTCTGCATGCTCCATCCTTGGGCTTGGCAGG
CAAGCTGCGATCTGTCTTTGGCTTTGATTTGTTATGCTCAGCAGCTCCAA
CAATCCCTAAAGTATCTTGCCGCCTAAAACCCTGCCAAGAAAGTGCTGCC
TTAGGTTTGATCCGATGTGCCCAGAAACTGCTATCTGCTCTCCACTTTTG
GATCTCACAAAGGGATAATGTGTTTTTCCCTCTTTGGTCAGGTGAGCTAT
CACTTCCTCCGACTTTCTCTACCATTCGAGGGGCGAAGAAAGTGGGCTTC
GCTCCAGCTACTGCCATCCTAGGGTAGGAAAGGGAGGCAGTCTCTCCACT
GGCCATTGGAGATGAGAATGCAGAAA
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