CX070588
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29 Identity = 64/193 (33.16%), Postives = 108/193 (55.96%), Query Frame = -2 Query: 190 VLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHXXXXXXXXXXITALQLLESAAD---------GEXXXXXXXXXXLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLD-NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 738 +L A LT FAL G ++G + GA+ GQ TE+GF+ + ++++ ES+ G L++G++ E + PA+L A Q Q+ +++ + E+S ++D G KGL+ D++ K+P+ + + + N+ CS+CL+ F+ G++ R LP C H FH C+D WL R+GSCP+CR Sbjct: 41 ILSAVLTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCR 233
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.591e-29 Identity = 64/193 (33.16%), Postives = 108/193 (55.96%), Query Frame = -2 Query: 190 VLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHXXXXXXXXXXITALQLLESAAD---------GEXXXXXXXXXXLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQL-DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 738 ++ A LT FAL G ++G + GA+ GQ TE+GF+ + ++++ ES+ D G L++G++ E + PA+L A Q Q+ ++TA+ + + ++D G KGL+ D+++K+P+ + +N CS+CL+ F+ G++ R LP C H FH C+D WL R+GSCP+CR Sbjct: 46 IISAILTFFFALVGTLLGALTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCR 238
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.985e-25 Identity = 61/192 (31.77%), Postives = 105/192 (54.69%), Query Frame = -2 Query: 190 LYAAL-TCIFALGGAIVGTIFGAMKGQTTETGFLHXXXXXXXXXXITALQLLESA---------ADGEXXXXXXXXXXLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 735 L++AL T FAL G ++G + GA+ GQ TE+GF+ + ++++ ES+ G L++G++ E + PA+L A Q Q+ +E+ +++ +D++D KGL+ D + ++P+ + + CS+CL+ F+ G++ R LP C H FH C+DKWL R+ SCP+CR Sbjct: 31 LFSALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTS----PEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 6.650e-25 Identity = 64/195 (32.82%), Postives = 99/195 (50.77%), Query Frame = -2 Query: 181 VLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHXXXXXXXXXXITALQLLESA---------ADGEXXXXXXXXXXLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 738 V ALT IFA+ GA G + GA+ G+ + G L I ++++LE++ L G++ E + ++ ++ WQ+ + +Y E DVY +GLS D ++KLP C + S E+++ C+ICL+ + G+ R LP C H FH CVDKWL R+GSCP+CR+ V Sbjct: 29 VFSGALTGIFAMAGAFTGAVTGAVAGRAAQYGVLRGAALGAVAGAILSVEVLEASRAYWYLELSGSRGPSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEEREDVYGELEARGLSGDSLRKLP-CYIMSSEMVRRQ-VTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAV 221
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12 Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = -2 Query: 163 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTDT 402 GL I+ LP L E + + E C ICL FEEG+ + LP C HC+H ECVD+WL SCP+CR + D+ + Sbjct: 80 GLDPAEIRSLP-VVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12 Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = -2 Query: 190 TGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 414 T GLS+D+ + LP ++ E I D++ CS+CL ++ + +++PSCGH FH EC+D WLT + +CP+CR Sbjct: 82 TAELGLSKDIREMLP-VVIYKESFIVKDSQ--CSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCR 153
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12 Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = -2 Query: 187 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 405 KGL + ++Q LP+ S E + + C+ICL +F GD R LP CGH FH C+D WL + SCP CR+ Sbjct: 83 KGLKKKVLQSLPKLTF-SPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQ 154
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12 Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = -2 Query: 190 GLSEDMIQKLP--------ECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 402 G+ ++++ LP A EE + D+ + C++CL + E+G+ AR LP CGH FH+ECVD WL + +CP+CR Sbjct: 98 GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12 Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = -2 Query: 181 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 405 KGL +I +P ++ E + D E C ICL +E GD RKL +CGH FH EC+D WL+ + +CP+CR V Sbjct: 110 KGLDSSVISSIP-LFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12 Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = -2 Query: 178 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 318 C +CL + +GD AR LPSC H FH EC+D WL N +CP+CR+ VC Sbjct: 88 CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVC 134 The following BLAST results are available for this feature:
BLAST of CX070588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX070588 ID=CX070588; Name=CX070588; organism=Citrus sinensis; type=EST; length=742bpback to top |