CX070588

Overview
NameCX070588
Unique NameCX070588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 64/193 (33.16%), Postives = 108/193 (55.96%), Query Frame = -2
Query:  190 VLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHXXXXXXXXXXITALQLLESAAD---------GEXXXXXXXXXXLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLD-NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 738
            +L A LT  FAL G ++G + GA+ GQ TE+GF+           + ++++ ES+           G           L++G++  E + PA+L A Q Q+  +++ + E+S ++D  G KGL+ D++ K+P+  +  +  +    N+  CS+CL+ F+ G++ R LP C H FH  C+D WL R+GSCP+CR
Sbjct:   41 ILSAVLTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCR 233          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.591e-29
Identity = 64/193 (33.16%), Postives = 108/193 (55.96%), Query Frame = -2
Query:  190 VLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHXXXXXXXXXXITALQLLESAAD---------GEXXXXXXXXXXLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQL-DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 738
            ++ A LT  FAL G ++G + GA+ GQ TE+GF+           + ++++ ES+ D         G           L++G++  E + PA+L A Q Q+  ++TA+ + + ++D  G KGL+ D+++K+P+  +         +N   CS+CL+ F+ G++ R LP C H FH  C+D WL R+GSCP+CR
Sbjct:   46 IISAILTFFFALVGTLLGALTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCR 238          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.985e-25
Identity = 61/192 (31.77%), Postives = 105/192 (54.69%), Query Frame = -2
Query:  190 LYAAL-TCIFALGGAIVGTIFGAMKGQTTETGFLHXXXXXXXXXXITALQLLESA---------ADGEXXXXXXXXXXLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 735
            L++AL T  FAL G ++G + GA+ GQ TE+GF+           + ++++ ES+           G           L++G++  E + PA+L A Q Q+  +E+ +++ +D++D    KGL+ D + ++P+  +           + CS+CL+ F+ G++ R LP C H FH  C+DKWL R+ SCP+CR
Sbjct:   31 LFSALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTS----PEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.650e-25
Identity = 64/195 (32.82%), Postives = 99/195 (50.77%), Query Frame = -2
Query:  181 VLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHXXXXXXXXXXITALQLLESA---------ADGEXXXXXXXXXXLVNGKVFMEWVSPAVLKAYQWQVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 738
            V   ALT IFA+ GA  G + GA+ G+  + G L           I ++++LE++                       L  G++  E +   ++ ++ WQ+   + +Y E  DVY     +GLS D ++KLP C + S E+++      C+ICL+  + G+  R LP C H FH  CVDKWL R+GSCP+CR+ V
Sbjct:   29 VFSGALTGIFAMAGAFTGAVTGAVAGRAAQYGVLRGAALGAVAGAILSVEVLEASRAYWYLELSGSRGPSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEEREDVYGELEARGLSGDSLRKLP-CYIMSSEMVRRQ-VTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAV 221          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = -2
Query:  163 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTDT 402
            GL    I+ LP   L   E  + + E  C ICL  FEEG+  + LP C HC+H ECVD+WL    SCP+CR  +  D+ +
Sbjct:   80 GLDPAEIRSLP-VVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  190 TGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 414
            T   GLS+D+ + LP   ++ E  I  D++  CS+CL  ++  +  +++PSCGH FH EC+D WLT + +CP+CR
Sbjct:   82 TAELGLSKDIREMLP-VVIYKESFIVKDSQ--CSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCR 153          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = -2
Query:  187 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 405
            KGL + ++Q LP+    S E  + +    C+ICL +F  GD  R LP CGH FH  C+D WL  + SCP CR+
Sbjct:   83 KGLKKKVLQSLPKLTF-SPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQ 154          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = -2
Query:  190 GLSEDMIQKLP--------ECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 402
            G+  ++++ LP          A   EE  + D+ + C++CL + E+G+ AR LP CGH FH+ECVD WL  + +CP+CR
Sbjct:   98 GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = -2
Query:  181 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 405
            KGL   +I  +P   ++ E   + D E  C ICL  +E GD  RKL +CGH FH EC+D WL+ + +CP+CR  V
Sbjct:  110 KGLDSSVISSIP-LFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183          
BLAST of CX070588 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = -2
Query:  178 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 318
            C +CL +  +GD AR LPSC H FH EC+D WL  N +CP+CR+ VC
Sbjct:   88 CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVC 134          
The following BLAST results are available for this feature:
BLAST of CX070588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ATL4M_ARATH4.450e-2933.16RING-H2 finger protein ATL4M OS=Arabidopsis thalia... [more]
ATL2B_ARATH7.591e-2933.16RING-H2 finger protein ATL2B OS=Arabidopsis thalia... [more]
ATL5P_ARATH2.985e-2531.77RING-H2 finger protein ATL5P OS=Arabidopsis thalia... [more]
ATL1Q_ARATH6.650e-2532.82RING-H2 finger protein ATL1Q OS=Arabidopsis thalia... [more]
ATL3D_ARATH1.699e-1242.50RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
ATL4E_ARATH4.943e-1241.33RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]
ATL1B_ARATH6.456e-1243.84RING-H2 finger protein ATL1B OS=Arabidopsis thalia... [more]
EL5_ORYSJ8.432e-1239.24E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL5O_ARATH8.432e-1244.00RING-H2 finger protein ATL5O OS=Arabidopsis thalia... [more]
ATL3E_ARATH8.432e-1255.32Putative RING-H2 finger protein ATL3E OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17G01-M1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070588 ID=CX070588; Name=CX070588; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATAAATGCCACTTAACGTCAACAAATCACAACG
AGGCCACACACCATTAATGTCTTCTTCATGAAAATGAAAGCAAAAAGTAA
TTACACTTTGGAATTTGGAATTCCATTGATAAGATCAGTGAATTCACCGG
TCTACATTACCATGTGTCAGTATCTTTACATACACATTCTCTACACACAG
GGCAAGAGCCATTTCTGGTTAGCCATTTATCTACGCATTCCGAATGAAAG
CAGTGCCCGCAACTGGGAAGTTTTCTTGCGGAATCTCCTTCCTCAAATTT
CTCTAAGCAAATTGAACAGCCAATTTCATTGTCTAATTGGATCAGTTCTT
CAGAATGGAGTGCGCATTCAGGAAGCTTTTGAATCATATCTTCGGATAAC
CCTTTAACTCCAGTCACATCGTATACATCAGAAACTTCTCTGTAAGCAGT
TTCTAATGTGCTAACTTGCCACTGATAGGCTTTCAGCACTGCAGGACTTA
CCCATTCCATGAAAACCTTGCCGTTTACTAAGCTACTTAACAATGCCGCC
TTGGACAACGACTCGCCATCAGCTGCTGATTCTAGCAATTGAAGGGCTGT
GATGGCGCCGGCCACAGCGCCTATTCCAGCCCCGTGAAGGAACCCAGTTT
CTGTTGTTTGGCCTTTCATGGCTCCAAATATTGTTCCAACAATTGCCCCT
CCTAAGGCAAAAATGCAGGTGAGTGCTGCATAAAGAACTCTT
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