CX070583

Overview
NameCX070583
Unique NameCX070583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.552e-68
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 257.684 bits (657), Expect = 4.517e-68
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    1 MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.314e-67
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 3.824e-67
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            MVRVSVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    1 MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.350e-63
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHR+GKIVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFGYIVLTTSAGIMDHEEAR+KNVGGKVLGFFY
Sbjct:    1 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS22A_YEAST (40S ribosomal protein S22-A OS=Saccharomyces cerevisiae GN=RPS22A PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.385e-55
Identity = 103/130 (79.23%), Postives = 117/130 (90.00%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS22_KLUMA (40S ribosomal protein S22 OS=Kluyveromyces marxianus GN=RPS22 PE=3 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 7.480e-55
Identity = 101/130 (77.69%), Postives = 116/130 (89.23%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS22B_YEAST (40S ribosomal protein S22-B OS=Saccharomyces cerevisiae GN=RPS22B PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 7.480e-55
Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            M R SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRSSVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS22_NEUCR (40S ribosomal protein S22 OS=Neurospora crassa GN=rps-22 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.769e-55
Identity = 101/130 (77.69%), Postives = 118/130 (90.77%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            MVR SVL+DAL S+ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFE VDDHR+GKIVV+LNGR+NKCGVISPR++V + E+E W  +LLP+RQFGY++LTTSAGIMDHEEARRK+V GK++GFFY
Sbjct:    1 MVRTSVLHDALNSINNAEKAGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEEVDDHRSGKIVVQLNGRMNKCGVISPRYNVRLAELEKWVVKLLPARQFGYVILTTSAGIMDHEEARRKHVSGKIIGFFY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS22_KLULA (40S ribosomal protein S22 OS=Kluyveromyces lactis GN=RPS22 PE=3 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 9.769e-55
Identity = 101/130 (77.69%), Postives = 116/130 (89.23%), Query Frame = 1 
Query:   61 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIADVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
The following BLAST results are available for this feature:
BLAST of CX070583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
R15A1_ARATH1.552e-6897.6940S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
RS15A_BRANA4.517e-6896.9240S ribosomal protein S15a OS=Brassica napus GN=RP... [more]
R15A4_ARATH1.314e-6796.1540S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
RS15A_DAUCA3.824e-6796.1540S ribosomal protein S15a OS=Daucus carota GN=RPS... [more]
R15A3_ARATH3.350e-6390.7740S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS22A_YEAST4.385e-5579.2340S ribosomal protein S22-A OS=Saccharomyces cerev... [more]
RS22_KLUMA7.480e-5577.6940S ribosomal protein S22 OS=Kluyveromyces marxian... [more]
RS22B_YEAST7.480e-5578.4640S ribosomal protein S22-B OS=Saccharomyces cerev... [more]
RS22_NEUCR9.769e-5577.6940S ribosomal protein S22 OS=Neurospora crassa GN=... [more]
RS22_KLULA9.769e-5577.6940S ribosomal protein S22 OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F11-K21-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070583 ID=CX070583; Name=CX070583; organism=Citrus sinensis; type=EST; length=708bp
TTTGCAGCTCACGTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTTGC
CTACGCAACAATGGTGAGAGTTAGTGTTCTGAATGACGCTCTTAAGAGCA
TGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCAGACCATCC
TCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTACAT
TGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGTTG
AACTGAACGGAAGATTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGAT
GTTGGCGTCAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCCTCAAG
ACAGTTTGGATACATTGTGCTGACAACTTCTGCTGGCATTATGGACCACG
AAGAGGCGAGAAGGAAGAATGTTGGTGGTAAAGTGCTTGGTTTTTTCTAC
TAGGCAAAGTTCATATTGAGAATGGGACTTGAGTTTTGTTTGTGTACTTT
GGAAGAACTTGTTCACAAATGGATTAGCTTCTCTTTGTTTTACTTGATTT
AATTATGCATTTTTAAACTCGGATTGGTACCTTTTAGTTGAAGAAAGATG
ATATTATGTGTTACACACATTTATCTCTTAGCAGTTGATTTGGTGATCAA
TTTTCCCAAGTTCTGTTAACATCTGATTGTGTAAGTGAGGAATATAAGTT
TTATTCCT
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