CX070578

Overview
NameCX070578
Unique NameCX070578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.297e-24
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:  509 GNYNVADFPSFAISFATAPAALVNCPPFPSVISMLCMAVPKGISVEVDSSF 661
            GN  VAD PSFAISFATAPAAL NCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   65 GNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 8.297e-24
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -1 
Query:  444 INQNPFPNRTSFFQSIRLSGC 506
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.297e-24
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:  509 GNYNVADFPSFAISFATAPAALVNCPPFPSVISMLCMAVPKGISVEVDSSF 661
            GN  VAD PSFAISFATAPAAL NCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   65 GNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 8.297e-24
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -1 
Query:  444 INQNPFPNRTSFFQSIRLSGC 506
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.297e-24
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:  509 GNYNVADFPSFAISFATAPAALVNCPPFPSVISMLCMAVPKGISVEVDSSF 661
            GN  VAD PSFAISFATAPAAL NCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   65 GNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 8.297e-24
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -1 
Query:  444 INQNPFPNRTSFFQSIRLSGC 506
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.297e-24
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:  509 GNYNVADFPSFAISFATAPAALVNCPPFPSVISMLCMAVPKGISVEVDSSF 661
            GN  VAD PSFAISFATAPAAL NCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   65 GNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 8.297e-24
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -1 
Query:  444 INQNPFPNRTSFFQSIRLSGC 506
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: YCF72_SACOF (Uncharacterized protein ycf72 OS=Saccharum officinarum GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.097e-23
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:  509 GNYNVADFPSFAISFATAPAALVNCPPFPSVISMLCMAVPKGISVEVDSSF 661
            GN  VA+ PSFAISFATAPAAL NCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   65 GNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 3.097e-23
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -1 
Query:  444 INQNPFPNRTSFFQSIRLSGC 506
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: YCF72_SACHY (Uncharacterized protein ycf72 OS=Saccharum hybrid GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.097e-23
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:  509 GNYNVADFPSFAISFATAPAALVNCPPFPSVISMLCMAVPKGISVEVDSSF 661
            GN  VA+ PSFAISFATAPAAL NCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   65 GNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 3.097e-23
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -1 
Query:  444 INQNPFPNRTSFFQSIRLSGC 506
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: YCF72_MAIZE (Uncharacterized protein ycf72 OS=Zea mays GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.245e-23
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:  509 GNYNVADFPSFAISFATAPAALVNCPPFPSVISMLCMAVPKGISVEVDSSF 661
            GN  VA+ PSFAISFATAPAAL NCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   65 GNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 37.3502 bits (85), Expect = 5.245e-23
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = -1 
Query:  444 NQNPFPNRTSFFQSIRLSGC 503
            ++NPFPN TSFFQSIRLS C
Sbjct:  117 SKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 3 
Query:  525 STDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            STDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 STDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLP 176
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2A_LIRTU (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 3 
Query:  525 STDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            STDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  130 STDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLP 175
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 3 
Query:  522 TSTDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            ++TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 SATDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 177
The following BLAST results are available for this feature:
BLAST of CX070578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
YCF72_ORYSJ8.297e-2488.24Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSI8.297e-2488.24Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSA8.297e-2488.24Uncharacterized protein ycf72 OS=Oryza sativa GN=y... [more]
YCF72_ORYNI8.297e-2488.24Uncharacterized protein ycf72 OS=Oryza nivara GN=y... [more]
YCF72_SACOF3.097e-2386.27Uncharacterized protein ycf72 OS=Saccharum officin... [more]
YCF72_SACHY3.097e-2386.27Uncharacterized protein ycf72 OS=Saccharum hybrid ... [more]
YCF72_MAIZE5.245e-2386.27Uncharacterized protein ycf72 OS=Zea mays GN=ycf72... [more]
RK2_DIOEL2.180e-1695.6550S ribosomal protein L2, chloroplastic OS=Dioscor... [more]
RK2A_LIRTU2.180e-1695.6550S ribosomal protein L2-A, chloroplastic OS=Lirio... [more]
RK2B_COFAR3.719e-1691.4950S ribosomal protein L2-B, chloroplastic OS=Coffe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070578 ID=CX070578; Name=CX070578; organism=Citrus sinensis; type=EST; length=683bp
TAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTT
TCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGAC
GGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCA
GTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCC
TACGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATT
CGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGGGAAGA
CCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCC
TATATATCCACTCATGTGGTACTTCATTATATGATATTGTGGTACTTCAT
TATATGATATATATAAGATCCATCTGTATAGATATCATCATCTACATCCA
GAAAGCCGTATGCTTTGGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTG
ATTGATCAAAAAGATGAATCTACTTCAACCGATATGCCCTTAGGCACGGC
CATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAACTAGAG
CAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACA
TTATAATTACCTTTCTGGGGAGGTCCGTTTTGA
back to top