CX070577

Overview
NameCX070577
Unique NameCX070577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_CITSI (30S ribosomal protein S19, chloroplastic OS=Citrus sinensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.988e-47
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIP MVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_EUCGG (30S ribosomal protein S19, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps19 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.455e-46
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLPIYITDRMVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_CARPA (30S ribosomal protein S19, chloroplastic OS=Carica papaya GN=rps19 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.104e-45
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_PLAOC (30S ribosomal protein S19, chloroplastic OS=Platanus occidentalis GN=rps19 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.460e-45
Identity = 85/92 (92.39%), Postives = 91/92 (98.91%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLNTKAEKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIEKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTMNFRGHAKNDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_FAGEA (30S ribosomal protein S19, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.158e-45
Identity = 82/92 (89.13%), Postives = 90/92 (97.83%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRK+DKLNTK EKEII+TWSRASTIIP M+GHTIAIHNGREHLP+YITDRM+GHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKLDKLNTKEEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPVYITDRMIGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_SPIOL (30S ribosomal protein S19 alpha, chloroplastic OS=Spinacia oleracea GN=rps19 PE=1 SV=4)

HSP 1 Score: 180.259 bits (456), Expect = 9.349e-45
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLN KAEKEII+TWSRASTIIP M+GHTIAIHNGREHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIEKLNKKAEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_SOYBN (30S ribosomal protein S19, chloroplastic OS=Glycine max GN=rps19 PE=3 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 9.349e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLNTKAEK+IIITWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKDIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_PHAVU (30S ribosomal protein S19, chloroplastic OS=Phaseolus vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.595e-44
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLNTKAEK+II+TWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_PHAAN (30S ribosomal protein S19, chloroplastic OS=Phaseolus angularis GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.595e-44
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLNTKAEK+II+TWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_COFAR (30S ribosomal protein S19, chloroplastic OS=Coffea arabica GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.595e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIP M+GHTI IHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIGIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of CX070577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_CITSI9.988e-4797.8330S ribosomal protein S19, chloroplastic OS=Citrus... [more]
RR19_EUCGG8.455e-4694.5730S ribosomal protein S19, chloroplastic OS=Eucaly... [more]
RR19_CARPA1.104e-4593.4830S ribosomal protein S19, chloroplastic OS=Carica... [more]
RR19_PLAOC2.460e-4592.3930S ribosomal protein S19, chloroplastic OS=Platan... [more]
RR19_FAGEA7.158e-4589.1330S ribosomal protein S19, chloroplastic OS=Fagopy... [more]
RR19_SPIOL9.349e-4591.3030S ribosomal protein S19 alpha, chloroplastic OS=... [more]
RR19_SOYBN9.349e-4591.3030S ribosomal protein S19, chloroplastic OS=Glycin... [more]
RR19_PHAVU1.595e-4490.2230S ribosomal protein S19, chloroplastic OS=Phaseo... [more]
RR19_PHAAN1.595e-4490.2230S ribosomal protein S19, chloroplastic OS=Phaseo... [more]
RR19_COFAR1.595e-4490.2230S ribosomal protein S19, chloroplastic OS=Coffea... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070577 ID=CX070577; Name=CX070577; organism=Citrus sinensis; type=EST; length=721bp
TTTAATCTTTTCGCAGTATGACCCATAGCTATTCGGCTTTAATAATGAAT
AAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTTGCTGCTGCAGA
ATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGGCATGAGTTCGA
GTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCTGATCAATTACC
CTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCTAAAGCAGATAC
TTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCACCTCTCACCAAT
GAATCTATATTCACTTTATTAACGACGGGATCTATTATCATTTTTTGCAT
GTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATTTATGTCCTACC
ATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCATTATGGATAGC
AATAGTATGGCCGACCATTGCGGGTATAATGGTAGATGCCCGGGACCAAG
TTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTATCGATTTTTCTT
AATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGT
TAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTGTAAAAACGAAG
AAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCGAAGAATCAAAT
ATCACTATATTTATTCCTTTT
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