CX070536

Overview
NameCX070536
Unique NameCX070536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.641e-21
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 3
Query:  123 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            PKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct:   14 PKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 67          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.657e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 3
Query:  123 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            PKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct:   17 PKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.146e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 3
Query:  123 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            PKA+KSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct:   17 PKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.896e-20
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  126 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            K SKSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct:   14 KGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEV 66          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.896e-20
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  126 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            K SKSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct:   14 KGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEV 66          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.007e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 3
Query:  126 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            K++KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAAEV
Sbjct:   14 KSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEV 66          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.422e-19
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  126 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            K +K+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct:   14 KTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEV 66          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.422e-19
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  126 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            K +K+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct:   14 KTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEV 66          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 7.625e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3
Query:  129 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            A K++SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAAEV
Sbjct:   13 AKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEV 64          
BLAST of CX070536 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.625e-19
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 3
Query:  129 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 284
            A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAAEV
Sbjct:   13 AKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEV 64          
The following BLAST results are available for this feature:
BLAST of CX070536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
H2AX_CICAR1.641e-2198.15Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH3.657e-2196.30Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH8.146e-2194.44Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AXB_ORYSJ6.896e-2094.34Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI6.896e-2094.34Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AX_PICAB9.007e-2092.45Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXA_ORYSJ3.422e-1990.57Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI3.422e-1990.57Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A7_WHEAT7.625e-1990.38Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A3_ARATH7.625e-1992.31Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17D04-G7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070536 ID=CX070536; Name=CX070536; organism=Citrus sinensis; type=EST; length=778bp
CACCGATCTTTTTTGTGGCTTCACTTTCAATCGCTTCAAACCAAACCGAA
ATCTAGGGTTAGGGTTTTTCTGTAATAAGAATGAGTTCAACTGGAGGGTC
AACGAAGGGCGGCAGGGGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGT
CGCATAAGGCGGGCCTTCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTG
AAGGCCGGAAAGTACGCTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCT
CTCTGCCGTGCTTGAGTACCTCGCTGCTGAGGTTTGTTTGTTTGTTTTAT
TATTGCCTGATAATGAAATTAGGGTTTGATTGAATTGAACTTTGAATTTG
TGAAATTTGCTTCTCAGTGGTAAATTTTTTATTTTTTAAAGGTGTCTTAA
TCATTTCTTCATGAAAACAAATACAACAGAAATTATGTTTTTTTGGATTA
TTTTATTCTTAAGTACGGCTGTTTACTTGTTGATACTTCAAATGTCAGTT
TTTTTTTCAAAATTGTTTCTTGGAAATTGATTAATATTTTTTTATTTTTT
AAGTGGGTCTTAAACATTTCTTCATCAAAACAAATAGAACTGGGATTATA
TAATTAGATTAATTGATTCTTAAGCACTGATGGTGAAGAAGAATTAAAGC
TGTTTGCTTATTGATACTTCAAAAATTGTTTCTTGAAACTGATTAAATGG
TTCAAGATTGTGATTTTTCCAGCCTTGTAATATGGGAAATGATTTTATGT
GTTTCAATCTACAGGTTCTGGAGCTTGC
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