CX070522

Overview
NameCX070522
Unique NameCX070522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070522 vs. ExPASy Swiss-Prot
Match: TRXL8_ARATH (Thioredoxin-like 8, chloroplastic OS=Arabidopsis thaliana GN=At5g04260 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.959e-50
Identity = 99/175 (56.57%), Postives = 129/175 (73.71%), Query Frame = 1 
Query:  217 PRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVTRAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIGNEN 741
            P  Q+   F  PR     S   T  +    +    + + K +G ++EL      D +PVS+ L PI  ES FD+V+ +AQ+L ESV+IVWMA+WCRKCIYLKPKLEKLAA+++PRLRFY+VDVNAVP++LV+RAGV KMPTIQLW+DG+KQAEVIGGHK++ V+NEVREMI N++
Sbjct:   24 PYRQTSSSFSRPRNFKYHS--FTDKICLAAERIRAVDIQKQDGGLQEL------DDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIENDS 190
[Close]
BLAST of CX070522 vs. ExPASy Swiss-Prot
Match: TRXL5_ARATH (Thioredoxin-like 5, chloroplastic OS=Arabidopsis thaliana GN=At5g06690 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.109e-35
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:  388 PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVTRAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMI 729
            P ++ + PI +  + D V++ A+QL + +II WMASWCRKCIYLKPKLEKLAA+Y+ R +FY VDVN VP  LV R  + KMPTIQLWK+ + + EVIGGHK +LVI EVRE+I
Sbjct:   68 PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELI 181
The following BLAST results are available for this feature:
BLAST of CX070522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRXL8_ARATH3.959e-5056.57Thioredoxin-like 8, chloroplastic OS=Arabidopsis t... [more]
TRXL5_ARATH2.109e-3559.65Thioredoxin-like 5, chloroplastic OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_17C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17C09-E17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070522 ID=CX070522; Name=CX070522; organism=Citrus sinensis; type=EST; length=800bp
CTTTCACCTCCCTGATCATCAGCATCATCGTCGCCGTCGTCGTCATTGGG
TCCCACCCACAACTTTGTTTTAAATTAAATTACATTTTATTTAAATAGAA
GTGGCAAAAAATTAGTACTTAATGTTTCTTGATCTTCTTCTTAGATTCTA
TCAAAAATGTACGGAGCTATACGATTCTCGCCATCTCTGAGATTCAGAAC
TCTCTTACCAACAAACCCACGTGACCAATCACGTGACCTTTTTGTACCTC
CTCGAATTCTCTCAATTTCAAGCTCTAATATTACAAAATCTGTAAATTTT
CGCGGGAAAATCGACAACGTGATTAGGGTCACGAAACATGAAGGATCAAT
AAAGGAACTTAACGAAGATGATGATGATGATCATGCTCCTGTATCGATTC
CGCTGACACCCATCGGCAGCGAGAGCCAGTTCGATCGGGTCATTGCAGAA
GCTCAACAGCTTGATGAATCTGTTATCATTGTTTGGATGGCAAGCTGGTG
CAGAAAATGTATATATCTGAAACCAAAATTAGAGAAGTTAGCAGCTGATT
ATCATCCAAGATTGCGATTCTATAATGTTGATGTCAATGCTGTTCCACAC
AAGCTTGTTACTCGTGCAGGAGTCATGAAAATGCCAACCATTCAGCTGTG
GAAGGATGGCAAGAAACAGGCGGAAGTAATTGGTGGTCACAAATCATACT
TGGTCATTAACGAAGTTCGTGAGATGATCGGAAATGAGAACAACGTATGA
GTATGACAGTATGATAGGCATATTTTTTCCCCCCAATTTTTGTCATAGCT
back to top