CX070521

Overview
NameCX070521
Unique NameCX070521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070521 vs. ExPASy Swiss-Prot
Match: TRXL8_ARATH (Thioredoxin-like 8, chloroplastic OS=Arabidopsis thaliana GN=At5g04260 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.490e-50
Identity = 99/175 (56.57%), Postives = 129/175 (73.71%), Query Frame = -1 
Query:  166 PRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVTRAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIGNEN 690
            P  Q+   F  PR     S   T  +    +    + + K +G ++EL      D +PVS+ L PI  ES FD+V+ +AQ+L ESV+IVWMA+WCRKCIYLKPKLEKLAA+++PRLRFY+VDVNAVP++LV+RAGV KMPTIQLW+DG+KQAEVIGGHK++ V+NEVREMI N++
Sbjct:   24 PYRQTSSSFSRPRNFKYHS--FTDKICLAAERIRAVDIQKQDGGLQEL------DDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIENDS 190
[Close]
BLAST of CX070521 vs. ExPASy Swiss-Prot
Match: TRXL5_ARATH (Thioredoxin-like 5, chloroplastic OS=Arabidopsis thaliana GN=At5g06690 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.392e-35
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = -1 
Query:  178 PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVTRAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMI 519
            P ++ + PI +  + D V++ A+QL + +II WMASWCRKCIYLKPKLEKLAA+Y+ R +FY VDVN VP  LV R  + KMPTIQLWK+ + + EVIGGHK +LVI EVRE+I
Sbjct:   68 PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELI 181
The following BLAST results are available for this feature:
BLAST of CX070521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRXL8_ARATH4.490e-5056.57Thioredoxin-like 8, chloroplastic OS=Arabidopsis t... [more]
TRXL5_ARATH2.392e-3559.65Thioredoxin-like 5, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_17C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17C09-E17-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070521 ID=CX070521; Name=CX070521; organism=Citrus sinensis; type=EST; length=864bp
CTTTTTTTTTGGGGCATGAACTTGGCAGAAACGCCTGCCAATTTTCATTT
CTGCTGTAAGTTCTGCAGAATTCTATTATCAGAAAAAAGATAAAAAAGAT
TTATGAAGCTATGACAAAAATTGGGGGGAAAAAATATGCCTATCATACTG
TCATACTCATACGTTGTTCTCATTTCCGATCATCTCACGAACTTCGTTAA
TGACCAAGTATGATTTGTGACCACCAATTACTTCCGCCTGTTTCTTGCCA
TCCTTCCACAGCTGAATGGTTGGCATTTTCATGACTCCTGCACGAGTAAC
AAGCTTGTGTGGAACAGCATTGACATCAACATTATAGAATCGCAATCTTG
GATGATAATCAGCTGCTAACTTCTCTAATTTTGGTTTCAGATATATACAT
TTTCTGCACCAGCTTGCCATCCAAACAATGATAACAGATTCATCAAGCTG
TTGAGCTTCTGCAATGACCCGATCGAACTGGCTCTCGCTGCCGATGGGTG
TCAGCGGAATCGATACAGGAGCATGATCATCATCATCATCTTCGTTAAGT
TCCTTTATTGATCCTTCATGTTTCGTGACCCTAATCACGTTGTCGATTTT
CCCGCGAAAATTTACAGATTTTGTAATATTAGAGCTTGAAATTGAGAGAA
TTCGAGGAGGTACAAAAAGGTCACGTGATTGGTCACGTGGGTTTGTTGGT
AAGAGAGTTCTGAATCTCAGAGATGGCGAGAATCGTATAGCTCCGTACAT
TTTTGATAGAATCTAAGAAGAAGATCAAGAAACATTAAGTACTAATTTTT
TGCCACTTCTATTTAAATAAAATGTAATTTAATTTAAAACAAAGTTGTGG
GTGGGACCCAATGA
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