CX070518

Overview
NameCX070518
Unique NameCX070518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070518 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 38/121 (31.40%), Postives = 61/121 (50.41%), Query Frame = 2 
Query:   14 NDPRNTARDCIPVVMSLGVFYKKPYTQ-GLDLAWTERLGRSIHNSVPALESAVGDLDKVVFEKGSCLEDQCAICLGGFCDGEEITRLPCFHDFHGACLEKWLDKSHLCPFCRFPLPVCRDT 373
            +DP    R  + + ++  +F +  +   GL + W        H   PA ++ V +L + V  +GS  E +C +CL  F + E    +PC H FH +C+  WL K++ CP CR+ LP   DT
Sbjct:   13 SDPEQETRTNMLLELARSLFNRMDFEDLGLVVDWDH------HLPPPAAKTVVENLPRTVI-RGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDT 126
The following BLAST results are available for this feature:
BLAST of CX070518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RN181_HUMAN7.963e-1131.40E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_17C07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17C07-E13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070518 ID=CX070518; Name=CX070518; organism=Citrus sinensis; type=EST; length=793bp
TAAGTTGATGGACAATGACCCTCGAAATACTGCCCGTGATTGCATACCTG
TTGTAATGTCGCTTGGGGTCTTTTACAAGAAGCCGTACACTCAAGGTTTA
GACCTTGCTTGGACTGAGAGATTGGGGAGATCAATTCACAACAGCGTGCC
TGCTTTAGAATCAGCTGTTGGGGATTTAGATAAGGTGGTTTTTGAAAAGG
GTTCTTGCCTGGAGGACCAGTGTGCTATTTGCTTGGGAGGGTTTTGTGAC
GGAGAGGAGATTACTCGGCTGCCTTGCTTCCATGATTTCCATGGAGCCTG
TTTAGAAAAATGGCTGGATAAGAGTCACCTGTGTCCATTCTGCCGGTTTC
CCTTGCCAGTTTGCCGAGACACAGAGGCCTTCTGGCCACGAAAGATACTT
AAATCAAGAAAGAGAGTTGGGATGCCATACCGGCATCGCGTTCCTGCCGT
TCGTACTAGGCCAGATGGTGTCTTATAGAATTAATAGAAGGAATTTCTTT
CGACAACACATGAATTTTTCCTTCCTTGCATCTATCTATATATATTAAGG
GCGAATGTTGCACCTTCTGATGTTCCTGGAAATTTTCTTTTCGTACTCTG
CTTGTTAATGGCACGCCCATAGAATTAATCGTCTTTATGTTACACAAAAT
TTGCAGCTCTCCATGTGGCAATGCAATTTTGACATACTGATTTGTTTATT
TGAAAATATATTCAACCAAAGAATTAATAACAACAAACGATCGCTTGTTT
TGTTCACTGGTCAATTAGGTTCTCTGTCGATGGCGCCGCAAGT
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