DR404428

Overview
NameDR404428
Unique NameDR404428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2900 contig Csv1_Contig2900:6..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_MOUSE (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.647e-32
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 3
Query:  168 SVTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSKRTL 404
            S+  +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKN+YGDAFIRGNNVLYIST KR +
Sbjct:    2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.647e-32
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 3
Query:  168 SVTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSKRTL 404
            S+  +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKN+YGDAFIRGNNVLYIST KR +
Sbjct:    2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_LACBS (U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82) GN=LSM6 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.651e-24
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 3
Query:  177 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSK 395
            T +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N YGDAFIRGNNVLYIS ++
Sbjct:   25 TGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIRGNNVLYISAAE 97          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_COPC7 (U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=LSM6 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.651e-24
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 3
Query:  177 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSK 395
            T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N YGDAFIRGNNVLYIS  +
Sbjct:   21 TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAFIRGNNVLYISADE 93          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_USTMA (U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis GN=LSM6 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 3
Query:  144 MSTGGEKGSVTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSKR 398
            MS   ++ +    +P DFLK + G+ V V+LNSG+DYRG+L+CLDGYMNIA+EQT EYV+G  KN YGDAFIRGNNV+YI+  ++
Sbjct:    1 MSAAAQQPNAKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGDAFIRGNNVMYITALEK 85          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_SCHPO (U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces pombe GN=lsm6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22
Identity = 45/68 (66.18%), Postives = 60/68 (88.24%), Query Frame = 3
Query:  183 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYIS 386
            +P +FL  + G+ V+++L+SGVDY+GIL+CLDGYMN+A+E+TEEYVNG+  N YGDAFIRGNNVLY+S
Sbjct:    4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVS 71          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_DICDI (Probable U6 snRNA-associated Sm-like protein LSm6 OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 3
Query:  192 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSKR 398
            +F K   GRPVVVKLN+GV+YRGIL  +DG MNI MEQTEEY+NGQLK +YGD F+RGNNVLYIS   R
Sbjct:   19 NFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNVLYISAQPR 87          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_AJECN (U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=LSM6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 3
Query:  159 EKGSVTT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYIS 386
            E GS +  K P+ FL  I G PV VKLNSGV Y+G L  +DGYMNIA+E+TEEYV+G+L+  YGDAF+RGNNVLYIS
Sbjct:    2 ENGSASEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVRGNNVLYIS 78          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_CHAGB (U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum GN=LSM6 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  159 EKGSVTT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYIS 386
            E G+ T    K P+ FL  I G PV VKLNSGV Y+G L  +DGYMNIA+E+TEEYVNG  +  YGDAF+RGNNV+YIS
Sbjct:    2 ENGAATQGEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGNNVMYIS 80          
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_COCIM (U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis GN=LSM6 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 3
Query:  162 KGSVTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYIS 386
            +G+  ++ P+ FL  I G  V VKLNSGV Y+G L  +DGYMNIA+E+T+E+VNG+L+  YGD F+RGNNVLYIS
Sbjct:    4 RGAADSQDPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVRGNNVLYIS 78          
The following BLAST results are available for this feature:
BLAST of DR404428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
LSM6_MOUSE1.647e-3283.54U6 snRNA-associated Sm-like protein LSm6 OS=Mus mu... [more]
LSM6_HUMAN1.647e-3283.54U6 snRNA-associated Sm-like protein LSm6 OS=Homo s... [more]
LSM6_LACBS1.651e-2469.86U6 snRNA-associated Sm-like protein LSm6 OS=Laccar... [more]
LSM6_COPC71.651e-2473.97U6 snRNA-associated Sm-like protein LSm6 OS=Coprin... [more]
LSM6_USTMA1.397e-2358.82U6 snRNA-associated Sm-like protein LSm6 OS=Ustila... [more]
LSM6_SCHPO5.871e-2266.18U6 snRNA-associated Sm-like protein LSm6 OS=Schizo... [more]
LSM6_DICDI1.001e-2171.01Probable U6 snRNA-associated Sm-like protein LSm6 ... [more]
LSM6_AJECN4.970e-2164.94U6 snRNA-associated Sm-like protein LSm6 OS=Ajello... [more]
LSM6_CHAGB2.467e-2062.03U6 snRNA-associated Sm-like protein LSm6 OS=Chaeto... [more]
LSM6_COCIM9.374e-2058.67U6 snRNA-associated Sm-like protein LSm6 OS=Coccid... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243E19 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243E19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404428 ID=DR404428; Name=DR404428; organism=Citrus sinensis; type=EST; length=680bp
GGGGATCGAAGCTCTGCAACTTTCTGTTGAGAAAAAAACCCTAACTCTTG
TTAGCTAAGCAAGAGAGAACGAATCCAATTCATCAAAATTCCCTCATCCC
GTTTCAGCTCGAAGCTCTCCTTCTTCTTCCCAGGTTAAAGAAGATGAGTA
CTGGAGGCGAGAAAGGTTCGGTCACTACAAAAACTCCTGCAGATTTCCTC
AAGTCTATTCGTGGTCGACCCGTTGTTGTAAAACTCAACTCTGGTGTTGA
CTACCGAGGCATTCTGGCTTGTCTAGATGGATACATGAATATTGCTATGG
AGCAAACAGAAGAATATGTCAATGGACAGCTGAAAAACGAGTATGGCGAT
GCATTCATTCGTGGAAATAATGTTCTTTACATTAGTACATCAAAGAGAAC
ATTAGCAGATGGGGCCTAGTTCTCATCACAAGTTTCTTCCCCTGCAATCA
ACATTTTCCTGATTAATTTGAATTGTAAGATTACATGGATTTTGAAAGTC
AGAGTGTACTAGAAATGTGTCCAACTTGAATGAAACAGTGAGACTTTTGC
TATGTATTCATTTTGTCGTATGGAAAAAAAAAATGTCAAATTCTTGATTT
GTAGCAATATTGAGAATTTGGTATAGTCAAATGAAAAAAAAATGTTGACA
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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