DR404428
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_MOUSE (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.647e-32 Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 3 Query: 168 SVTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSKRTL 404 S+ +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKN+YGDAFIRGNNVLYIST KR + Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.647e-32 Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 3 Query: 168 SVTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSKRTL 404 S+ +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKN+YGDAFIRGNNVLYIST KR + Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_LACBS (U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82) GN=LSM6 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.651e-24 Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 3 Query: 177 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSK 395 T +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N YGDAFIRGNNVLYIS ++ Sbjct: 25 TGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIRGNNVLYISAAE 97
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_COPC7 (U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=LSM6 PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.651e-24 Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 3 Query: 177 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSK 395 T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N YGDAFIRGNNVLYIS + Sbjct: 21 TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAFIRGNNVLYISADE 93
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_USTMA (U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis GN=LSM6 PE=3 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23 Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 3 Query: 144 MSTGGEKGSVTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSKR 398 MS ++ + +P DFLK + G+ V V+LNSG+DYRG+L+CLDGYMNIA+EQT EYV+G KN YGDAFIRGNNV+YI+ ++ Sbjct: 1 MSAAAQQPNAKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGDAFIRGNNVMYITALEK 85
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_SCHPO (U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces pombe GN=lsm6 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22 Identity = 45/68 (66.18%), Postives = 60/68 (88.24%), Query Frame = 3 Query: 183 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYIS 386 +P +FL + G+ V+++L+SGVDY+GIL+CLDGYMN+A+E+TEEYVNG+ N YGDAFIRGNNVLY+S Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVS 71
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_DICDI (Probable U6 snRNA-associated Sm-like protein LSm6 OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21 Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 3 Query: 192 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYISTSKR 398 +F K GRPVVVKLN+GV+YRGIL +DG MNI MEQTEEY+NGQLK +YGD F+RGNNVLYIS R Sbjct: 19 NFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNVLYISAQPR 87
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_AJECN (U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=LSM6 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21 Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 3 Query: 159 EKGSVTT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYIS 386 E GS + K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G+L+ YGDAF+RGNNVLYIS Sbjct: 2 ENGSASEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVRGNNVLYIS 78
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_CHAGB (U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum GN=LSM6 PE=3 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20 Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 3 Query: 159 EKGSVTT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYIS 386 E G+ T K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG + YGDAF+RGNNV+YIS Sbjct: 2 ENGAATQGEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGNNVMYIS 80
BLAST of DR404428 vs. ExPASy Swiss-Prot
Match: LSM6_COCIM (U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis GN=LSM6 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20 Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 3 Query: 162 KGSVTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNEYGDAFIRGNNVLYIS 386 +G+ ++ P+ FL I G V VKLNSGV Y+G L +DGYMNIA+E+T+E+VNG+L+ YGD F+RGNNVLYIS Sbjct: 4 RGAADSQDPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVRGNNVLYIS 78 The following BLAST results are available for this feature:
BLAST of DR404428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404428 ID=DR404428; Name=DR404428; organism=Citrus sinensis; type=EST; length=680bpback to top |