CX070470

Overview
NameCX070470
Unique NameCX070470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3395 contig Csv1_Contig3395:229..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.995e-66
Identity = 125/206 (60.68%), Postives = 160/206 (77.67%), Query Frame = -2
Query:  245 KKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLL-GKKQPFKDGGEAGNREEEINELISKMN 859
            KK KV DIKRPE F+ ++R +E+D+IRMKQR KR K      KS L+FIIRIQG +DMHPKTK+IL NL+L+ +F+GVF +A D + + L KV+PYVTYGYPN  +VK+LIYKKG   ++   +PLTDNNIIEQ LG++ I+ IED+V+EIA VG HF+EV+ FLGPL LNKP   +L  KKQ F +GG+ GNRE++IN+LISKMN
Sbjct:   42 KKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLISKMN 247          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.341e-61
Identity = 115/209 (55.02%), Postives = 153/209 (73.21%), Query Frame = -2
Query:  245 KKSKVED----IKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 859
            KK  VE      KR EQ+ K+Y +++ +LIR+K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYGYPNL +VKELIYK+GY  ++ QRI LTDN+I++Q LGK+GIIC+ED++HEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE  INEL+ +MN
Sbjct:   34 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.759e-60
Identity = 115/209 (55.02%), Postives = 151/209 (72.25%), Query Frame = -2
Query:  245 KKSKVED----IKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 859
            KK   E+     KR EQ+ K+Y ++E +LI +K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYG+PNL +VKELIYK+GY  ++ QRI LTDN+I+EQ LGK+GIIC ED++HEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE  INELI +MN
Sbjct:   34 KKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.999e-58
Identity = 110/209 (52.63%), Postives = 152/209 (72.73%), Query Frame = -2
Query:  245 KKSKVEDIK----RPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 859
            KK   E  K    R +Q+ K+Y+++E +LI++K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYGYPNL +VKELIYK+G+  ++ QR  LTDN+I++Q LGK+GIIC+ED++HEI  VGPHFKE  NFL P  L  P GG+  K+  + +GG+AGNRE  INEL+ +MN
Sbjct:   36 KKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.341e-54
Identity = 97/205 (47.32%), Postives = 142/205 (69.27%), Query Frame = -2
Query:  248 NKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 862
            NK+ K +  KR E+++++YR+ + + +R+K+  +         + K+ F++RI+G + +HPK +K L  LRLR+I +GVFV+ N   L +L+ +EPYV +GYPN   + +L+YK+GYA VD  R+P+TDN I+EQ+LGK+ IIC+ED+ HEIA VGPHFKE  NFL P  LN P GG   K   F +GG+ GNRE++IN L+ KM
Sbjct:   39 NKEKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 3.902e-54
Identity = 105/207 (50.72%), Postives = 147/207 (71.01%), Query Frame = -2
Query:  245 NKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINELISKMN 862
            NK+ +    KR E ++K+YRD E + IR+++  K+        ++KL+F+IRI+G + + PK +KIL  LRL +I +GVFVR      E+++ VEP+V YGYPNL +VKELIYK+GY  V++QR+ LTDN+IIE+ LGKYGIIC+ED++HEI  VGP+FK+  NFL P  L+ P GG   +K + F +GG+ GNREE IN LI +MN
Sbjct:   42 NKEKRAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.796e-52
Identity = 98/197 (49.75%), Postives = 136/197 (69.04%), Query Frame = -2
Query:  245 KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 835
            KR E+++ +Y   E + IR+ +  K S      P +K+ F+IRI+G + + PK +K+L  LRL ++ +GVFV+ N   + +L+ VEPYV YG+PNL ++KELIYK+G+  +D QRIPLT N+++E+ LGK+GIIC+EDI+HEI   G HFK+V N L P  LN P GG   KK PF  GG+AGNRE  IN LI +MN
Sbjct:   50 KRAEKYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN 246          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.229e-52
Identity = 101/199 (50.75%), Postives = 140/199 (70.35%), Query Frame = -2
Query:  245 RPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFK---DGGEAGNREEEINELISKMN 832
            R E+++K+YR+ E + IR+++  K +       + KL+F+IRI+G S M PK +K+L  LRL +I +GVFVR      E+L+ VEPY+ +GYPNLA+V++L+YK+GY  V++QRIPL+DN IIE+ LGKYGIIC+ED++HEI  VGP FK+  NFL P  L+ P GG  G ++ FK   +GG  GNREE IN LI   N
Sbjct:   53 RAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGG-WGVRRKFKHYIEGGSTGNREENINALIKAQN 250          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.464e-50
Identity = 93/197 (47.21%), Postives = 136/197 (69.04%), Query Frame = -2
Query:  245 KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 835
            ++ + + K+YR      IRM +  +++       + KL F+IRI+G + + PK +K+L  LRLR+IF+G FV+ N   + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN +I ++LGKYGIIC+ED++HEI  VG  FKE  NFL P  L+ P GG+  K   F +GG+AGNRE++IN LI +MN
Sbjct:   51 EKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.615e-50
Identity = 93/197 (47.21%), Postives = 136/197 (69.04%), Query Frame = -2
Query:  245 KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 835
            ++ + + K+YR      IRM +  +++       + KL F+IRI+G + + PK +K+L  LRLR+IF+G FV+ N   + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN +I ++LGKYGIIC+ED++HEI  VG  FKE  NFL P  L+ P GG+  K   F +GG+AGNRE++IN LI +MN
Sbjct:   51 EKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
The following BLAST results are available for this feature:
BLAST of CX070470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL71_ARATH1.995e-6660.6860S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL73_ARATH7.341e-6155.0260S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL72_ARATH4.759e-6055.0260S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH1.999e-5852.6360S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_CAEEL1.341e-5447.3260S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_NEUCR3.902e-5450.7260S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_DICDI2.796e-5249.7560S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7_YARLI6.229e-5250.7560S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_MACFA4.464e-5047.2160S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_PONAB7.615e-5047.2160S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17A02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17A02-A3-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070470 ID=CX070470; Name=CX070470; organism=Citrus sinensis; type=EST; length=863bp
CTTTTTTTTTAAACAGCAAGCTTAATATATTTCGCAAGTGAAATGATAAT
AAAATACAGATTATCCCTAACAATAGAACCTTCAAAACTCGTTAACCTGG
TATTAAGCTTAACAGGATTAGAAAAACATCAAAATTGGGCTACATAGGAC
TACAGTATATCTTCTCTTTAGCAGAACCATTCTTTTAGTGCCGAATCATT
GATTCCATTTTCATCATTTGCTTCTCATGGAATCATAACTCCTAATTCAT
CTTACTGATTAATTCGTTGATTTCTTCCTCACGGTTTCCAGCTTCTCCAC
CGTCCTTGAATGGTTGTTTCTTCCCTAGCAATCCTCCTTCAGGCTTGTTT
AGTGTTAAAGGACCCAGAAAGTTGATGACCTCTTTAAAATGAGGACCAAC
ATTGGCTATTTCATGTACTATATCCTCAATGCATATAATGCCATATTTCC
CCAACGTCTGTTCAATAATGTTATTGTCTGTGAGAGGAATTCTTTGCCTA
TCTACAGTTGCATAACCCTTCTTGTAAATTAGCTCCTTCACATTTGCAAG
ATTAGGATATCCATATGTGACATATGGCTCCACCTTTTGCAGCACTTCTA
ACATACCATCATTAGCCCTGACAAAGACACCACTGAAAATTCTCCTCAAT
CTAAGGTTGTAGAGAATCTTCTTAGTCTTAGGGTGCATATCACTTGTGCC
TTGTATGCGTATAATAAAAAGCAACTTAGATTTTGGCTTCCCGATCACTT
TTTTCGACCTTTTCCCTCTTTGTTTCATTCGGATAAGGTCCAATTCCTGG
TCCCTATACTGTTTGATAAATTGCTCGGGTCTTTTGATATCCTCAACTTT
GCTCTTCTTGTTC
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