CX070459

Overview
NameCX070459
Unique NameCX070459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070459_ssr323 microsatellite CX070459_ssr323:323..332. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX070459 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.853e-18
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = -1 
Query:  441 KLEKWVSWQNPAWPWCKLNSDGACKSNR-ISTVGGLLQDYSGKWVGGFAMNIDFCSITDVELWGLYQGLVMSWNYGVRWLLVEVE 692
            ++E+ + W +P   W K+N+DGA + N  +++ GG+L+D +G W GGF++NI  CS    ELWG+Y GL  +W   V  + +EV+
Sbjct:  445 RVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVD 529

HSP 2 Score: 31.9574 bits (71), Expect = 7.853e-18
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = -3 
Query:  250 LLLTIYI*RVANFAADYLLNYSSDVSIGFHNF 345
            L+  +++ R AN  AD L NY+  +S+GFH+F
Sbjct:  563 LVRIVHVYREANRLADGLANYAFSLSLGFHSF 594
The following BLAST results are available for this feature:
BLAST of CX070459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RNHX1_ARATH7.853e-1840.00Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_16H08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16H08-P16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070459 ID=CX070459; Name=CX070459; organism=Citrus sinensis; type=EST; length=842bp
TCGTGAGGCTGGCTTCAAAGAGCCACAACGATGTCCCACAACGATGTCCC
ACTCCCGCAGTGGAAGGATAACAGGCTAGATTCTCCTAAGCCCAATATAT
CCCATTGGGTTTAACCCAATTGAACCGTCACTTTTTTTTTTTGGGTACAA
AGGAGCTCTTAAACAGAGCTAAGGAAGCACAAATCGGGGGTATGCAATCT
CATATATATCAAGAAGCAAAAGCAAAGTGACACTAGCCAGAGGACTAATG
AAATTGTGAAAGCCAATGGAGACGTCAGAGGAGTAGTTCAGAAGGTAGTC
CGCTGCAAAATTCGCCACTCTCTATATATATATGGTTAATAGTAATGTGC
CAACTCCTGTGCATAAGTTCCTTAATCGACCTTACTATTGGAGAATACTC
GTTAGTCACCTCTACGGAATTATACAACATCTGCACAACACTCAACTTCC
ACGAGCAACCAACGAACTCCATAGTTCCAAGACATGACTAAACCTTGATA
TAAACCCCATAATTCCACATCAGTGATCGAGCAAAAATCGATGTTCATCG
CAAATCCACCAACCCATTTTCCACTGTAATCCTGAAGAAGTCCACCAACA
GTAGAGATCCTATTGCTTTTGCAAGCACCATCAGAATTAAGTTTACACCA
AGGCCATGCAGGGTTCTGCCAACTGACCCATTTCTCCAGCTTGCTGCCTT
TCTTAGTCAATCCAGACTTGTTCATGCAAAGGATCTCCTCTGCTCGCGTA
ACAACATCCTGTATCATGCTATTGGTGTCCACCCATAACTGATTGAATTG
ATATTGATTTCGCCAAAACCATAGTCTCTATATCGCGACCCC
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