CX070453

Overview
NameCX070453
Unique NameCX070453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig697 contig Csv1_Contig697:156..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: FCF1_PONAB (rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.298e-70
Identity = 128/174 (73.56%), Postives = 144/174 (82.76%), Query Frame = -3
Query:  227 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATVGGAPR 742
            ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+PGVPIMYI+ H+Y+IER+P+    GAPR
Sbjct:   26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY--GAPR 197          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: FCF1_HUMAN (rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.298e-70
Identity = 128/174 (73.56%), Postives = 144/174 (82.76%), Query Frame = -3
Query:  227 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATVGGAPR 742
            ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+PGVPIMYI+ H+Y+IER+P+    GAPR
Sbjct:   26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY--GAPR 197          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: FCF1_BOVIN (rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.298e-70
Identity = 128/174 (73.56%), Postives = 144/174 (82.76%), Query Frame = -3
Query:  227 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATVGGAPR 742
            ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+PGVPIMYI+ H+Y+IER+P+    GAPR
Sbjct:   26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY--GAPR 197          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: FCF1_MOUSE (rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 9.174e-69
Identity = 125/174 (71.84%), Postives = 144/174 (82.76%), Query Frame = -3
Query:  227 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATVGGAPR 742
            ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQK+RVALRIAKDPRF+RLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+PGVPIMY++ H+Y+IER+P+    GAPR
Sbjct:   26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVALRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLSNHRYNIERMPDDY--GAPR 197          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: FCF1_YEAST (rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae GN=FCF1 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.391e-61
Identity = 110/176 (62.50%), Postives = 141/176 (80.11%), Query Frame = -3
Query:  251 ITKRAIKNYKEDVLNPNKKDL-TKE--KMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPE 769
            + KR +   K+  L  N++++ TKE  ++ RN+P VSSALFF +N A+ PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELEKLG KYR+AL++A+DPR +RL C+HKGTYADDCLV RV QHKC+IVAT D  LK+RIRK+PG+P+M +  H Y IE+LP+
Sbjct:   12 LVKRTLNTKKDQRLKKNQENIKTKEDPELTRNIPQVSSALFFQYNQAIKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRIALKLARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPLMSVGGHAYVIEKLPD 187          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: FCF1_SCHPO (rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe GN=fcf1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.579e-58
Identity = 109/177 (61.58%), Postives = 136/177 (76.84%), Query Frame = -3
Query:  257 KRAIKNYKEDVLNPNKKDLTKEK--------MPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERL 763
            KR I N K+  L   KKD  KEK        + R +P ++S LFF  N +LGPPY V++DTNFINF +Q K+DL +G+M CLYAK  PCI+DCVMAELEKLG +YR+ALRIAKD RFERLPCTHKGTYADDC+V+RV QHKC++VAT D++LK+RIRK+PG+PI+ +  HK  +ERL
Sbjct:   14 KRVI-NLKDQRLQ--KKDQKKEKEKTTKNGELVREIPQMASNLFFQFNESLGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRIALRIAKDERFERLPCTHKGTYADDCIVQRVMQHKCYLVATNDKNLKQRIRKIPGIPILSVANHKIRVERL 187          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: FCF1_DICDI (rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.420e-55
Identity = 94/172 (54.65%), Postives = 133/172 (77.33%), Query Frame = -3
Query:  251 TKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPE 766
            T     N ++ +    ++D  ++K+     + +S +FF++N AL PPY V++DTNFINFSI +KLD+   +MDCLYAKC P I+DCV AE+E+LG K++VAL+I+KDPRF+RL C+HKGTYADDC++ R+T H+ FIVATCD DL+RRIRK+PGVPI+Y+   KY++ER+P+
Sbjct:   20 TNPNFSNRQKQIQRSKQEDEHRKKLEEIPEDNTSHMFFSYNEALVPPYHVIIDTNFINFSISHKLDIIHSLMDCLYAKCIPYISDCVAAEIERLGSKFKVALKISKDPRFQRLTCSHKGTYADDCIINRITMHRMFIVATCDADLRRRIRKIPGVPIVYLKGKKYTVERMPD 191          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: UTP23_SCHPO (rRNA-processing protein utp23 OS=Schizosaccharomyces pombe GN=utp23 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 43/136 (31.62%), Postives = 72/136 (52.94%), Query Frame = -3
Query:  242 PYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTH--KGTYADDCLVERV-----TQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATV 628
            PY+VLVD +F+    Q K+D++  +   +     P IT C + +L     + +  +RIAK   FER  C H  +     +C+   V      +H+ ++VAT D +L++ +R VPGVP++Y+ R    +E    AT+
Sbjct:   25 PYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYSKSDELKQEIRIAKS--FERRRCGHIDEALSPSECIQSVVNINGRNKHR-YVVATQDPELRQALRSVPGVPLIYMKRSVVILEPASRATL 157          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: UTP23_BOVIN (rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = -3
Query:  242 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCL---VERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATV 658
            FF +N  +  PY++L+D  F   +++ ++ L + +   L A+   C T CV+ ELE LG+    A  IA+  +    P         +CL   VE    H  F+ AT D++L  +++K PG+P+M+I ++   +++    T+
Sbjct:   15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMAETQLCTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFL-ATQDQNLSMKVKKKPGIPLMFIIQNTIVLDKPSPKTI 155          
BLAST of CX070453 vs. ExPASy Swiss-Prot
Match: UTP23_HUMAN (rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.031e-11
Identity = 39/141 (27.66%), Postives = 73/141 (51.77%), Query Frame = -3
Query:  242 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHK--CFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATV 658
            FF +N  +  PY++L+D  F   +++ ++ L + +   L  +   C T CV+ ELE LG+    A  IA+  +    P         +CL+  V +     + VAT D++L  +++K PGVP+M+I ++   +++    T+
Sbjct:   15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLCTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTI 155          
The following BLAST results are available for this feature:
BLAST of CX070453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FCF1_PONAB8.298e-7073.56rRNA-processing protein FCF1 homolog OS=Pongo abel... [more]
FCF1_HUMAN8.298e-7073.56rRNA-processing protein FCF1 homolog OS=Homo sapie... [more]
FCF1_BOVIN8.298e-7073.56rRNA-processing protein FCF1 homolog OS=Bos taurus... [more]
FCF1_MOUSE9.174e-6971.84rRNA-processing protein FCF1 homolog OS=Mus muscul... [more]
FCF1_YEAST5.391e-6162.50rRNA-processing protein FCF1 OS=Saccharomyces cere... [more]
FCF1_SCHPO5.579e-5861.58rRNA-processing protein fcf1 OS=Schizosaccharomyce... [more]
FCF1_DICDI4.420e-5554.65rRNA-processing protein FCF1 homolog OS=Dictyostel... [more]
UTP23_SCHPO7.894e-1231.62rRNA-processing protein utp23 OS=Schizosaccharomyc... [more]
UTP23_BOVIN7.894e-1228.87rRNA-processing protein UTP23 homolog OS=Bos tauru... [more]
UTP23_HUMAN1.031e-1127.66rRNA-processing protein UTP23 homolog OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16H05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16H05-P10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070453 ID=CX070453; Name=CX070453; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTAAAACTGGGAATATTTAGTAGGAAAAATATCATTAATAGAATT
ACACAAGGCACAAAATAAGTGCCTCAATCACAATACTGATACACACATCA
TTTCATCGAGCTATCATCATTCCTACGCAAAAGTTCTAATATTTAGAACA
TCTTAAGGCTCAACATTGAGTTAGGACAGCAGCACAGATGATTCTCAATT
GAATGATCCTCCTCCCATTATCAAATTCTTGGAGCTCCACCAACTGTTGC
CTCTGGCAGCCGCTCAATTGAATACTTGTGCCGGGTTATGTACATGATAG
GCACTCCGGGAACCTTCCGTATCCTTCGCTTCAGATCTCGATCACATGTA
GCAACTATGAAGCATTTATGCTGAGTAACTCTTTCAACAAGACAATCATC
AGCATAGGTCCCTTTATGAGTACAGGGTAATCTCTCAAAACGAGGATCCT
TAGCAATCCTCAGAGCTACTCGGTACTTCTGACCTAGCTTCTCAAGCTCT
GCCATCACACAATCCGTAATACAAGGAGTGCATTTCGCATATAAGCAGTC
CATCATTCCCTTCTCCAAATCCAATTTATTCTGGATGGAGAAATTAATAA
AGTTGGTATCCACCAAGACCCGGTAAGGCGGTCCCAAGGCAGTGTTGTGT
GTGAAGAAAAGTGCCGAAGAAACATTAGGCACATTTCTTGGCATCTTTTC
CTTAGTAAGGTCTTTCTTGTTGGGATTCAAAACATCCTCTTTGTAATTTT
TTATAGCTCTTTTGGTGATGATCTTCTTCATGGCGGGAAATTTAGGAGCC
TTTTTGGCTTTCCCCATCTCTTTGATTGAAAGCTTACAAATTT
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