CX070449

Overview
NameCX070449
Unique NameCX070449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8236 contig Csv1_Contig8236:472..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.886e-40
Identity = 83/157 (52.87%), Postives = 101/157 (64.33%), Query Frame = -3
Query:  351 VVYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 821
            +VYG+IVYAMIGFEWTAVKF WY+           FYGMM VAMTPN HIA+VVS AFYGIWN+FSGF               W  P+AWTLYGL+ASQFGDI +   +S  +VKQF+R ++G++  FLGV+               A+GIK+FNFQ
Sbjct: 1265 IVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQ 1421          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.629e-40
Identity = 85/157 (54.14%), Postives = 99/157 (63.06%), Query Frame = -3
Query:  351 VVYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 821
            V YG+IVYAMIGFEW   KF WY+           FYGMM VA+TPN ++A++V+  FYG+WN+FSGF               WANP+AWTLYGLVASQFGDI  T+L   ETV+QFLR YFGFKHDFLGV+               A  IKAFNFQ
Sbjct: 1277 VFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDI-QTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQ 1432          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.805e-37
Identity = 78/157 (49.68%), Postives = 96/157 (61.15%), Query Frame = -3
Query:  351 VVYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 821
            VVYG+IVY++IGF+WT  KF WY+           FYGMM VAMTPN  IA +VS AFY IWN+F+GF               WA P+AWTLYGLVASQ+GDI ++ LE GE V+ ++R YFGF+HD+LG +               A  IK FNFQ
Sbjct: 1286 VVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQ 1442          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.860e-37
Identity = 80/156 (51.28%), Postives = 96/156 (61.54%), Query Frame = -3
Query:  351 VYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 818
            VYG+IVY+MIGFEWT  KF W             F+GMM VA+TPN ++A++V+  FY +WN+FSGF               W  PIAWTLYGLVASQFGD+ D   +  +TV+QFLRS FGFKHDFLGV+               ALGIKAFNFQ
Sbjct: 1279 VYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQ 1434          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.996e-36
Identity = 79/156 (50.64%), Postives = 92/156 (58.97%), Query Frame = -3
Query:  351 VYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 818
            VYG+IVYAMIGFEWTA KF WY+           FYGMM V +TPN HIA++VS AFY IWN+FSGF               WA P+AWTLYGLV SQFGDI +T +E G  VK F+ +YFGFKH +LG +                  I  FNFQ
Sbjct: 1301 VYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQ 1455          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.996e-36
Identity = 79/156 (50.64%), Postives = 92/156 (58.97%), Query Frame = -3
Query:  351 VYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 818
            VYG+IVYAMIGFEWTA KF WY+           FYGMM V +TPN HIA++VS AFY IWN+FSGF               WA P+AWTLYGLV SQFGDI +T +E G  VK F+ +YFGFKH +LG +                  I  FNFQ
Sbjct: 1301 VYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQ 1455          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.207e-35
Identity = 74/157 (47.13%), Postives = 93/157 (59.24%), Query Frame = -3
Query:  351 VVYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 821
            ++YG++VY+MIGF+WTA KF+WY+           +YGMM VAMTPN  IA +V+ AFY IWN+F+GF               WA P+AWTLYGLV SQFG+  DT  +  ETVK FLR + GF+HDFL V+               A  IK  NFQ
Sbjct: 1283 LLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQ 1439          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.435e-34
Identity = 73/157 (46.50%), Postives = 92/157 (58.60%), Query Frame = -3
Query:  351 VVYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 821
            ++YG+IVY+MIGF+WTA KF WY+           FYGMM V +TP+ H+A++VS AFYGIWN+FSGF               W  P+AWTLYGLVASQFGDI  T ++ G  VK F+ +YF FKH +LGV+                  I   NFQ
Sbjct: 1307 IIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI-MTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQ 1462          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.284e-32
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = -3
Query:  351 VVYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 821
            ++YGV+VY+MIGFEWT  KF+WY+           FYGMM V +TPN  IA ++S AFY +WN+FSG+               W  P+AWTLYGLVASQFGDI         TV QF+  YFGF H+FL V+               +  I  FNFQ
Sbjct: 1292 LIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQ 1448          
BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.761e-30
Identity = 68/161 (42.24%), Postives = 89/161 (55.28%), Query Frame = -3
Query:  351 VVYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESG----ETVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXALGIKAFNFQ 821
            ++YG I Y++  FEWTAVKF+WY+           FYGMM  A+TPN  +A +++  FY +WN+F GF               WANP++WTLYGL+ SQFGD+D   L +      T   FLR +FGF+HDFLGV+               AL IK  NFQ
Sbjct: 1288 LIYGTIFYSLGSFEWTAVKFLWYLFFMYFTLLYFTFYGMMTTAITPNHTVAPIIAAPFYTLWNLFCGFMIPRKRIPAWWRWYYWANPVSWTLYGLLTSQFGDLDQPLLLADGITTTTAVDFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQ 1448          
The following BLAST results are available for this feature:
BLAST of CX070449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB40G_ARATH3.886e-4052.87ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR1_TOBAC6.629e-4054.14Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR7_ORYSJ1.805e-3749.68Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR1_NICPL6.860e-3751.28Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR3_ORYSJ1.996e-3650.64Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI1.996e-3650.64Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
TUR2_SPIPO2.207e-3547.13Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR2_ORYSJ5.435e-3446.50Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR4_ORYSJ2.284e-3244.59Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR6_ORYSJ4.761e-3042.24Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_16H03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16H03-P6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070449 ID=CX070449; Name=CX070449; organism=Citrus sinensis; type=EST; length=823bp
AAAGTTATTGCCCATATCGAATCATTAAAAGGCTTGATTAAGGAGTGGCA
GAGCTACATAAGTACATATACCTCAAGCCTCAAGAGACTTGGAAGAGAAT
AAAAACACCCTATGACAAAATAGTTTCCGTATTTATGCTTTCCAAGTAAT
AGTTTTTAGAACACACTTTTGCAGCAAGAGGAAAAAAAAACAAAACAAAA
ATCACAATACTACATTGTCTGCCGACAGTTCTCAGAAATCTCCATTGCAA
AAGAGATTCTAGACATACTTCAAAAATATAAACAAATAAATAGCAAATTT
TTTCAATACTCAAAGCGACTGCTCAAAGACAAATTAAATTACTATCGCCT
CTGGAAATTGAATGCCTTAATTCCAAGAGCAAAGACAAACACGAAGAGCA
CTGTGAATGCAACATGAACAGCTGCAATGACTCCTAGAAAATCATGTTTA
AAACCAAAATAACTTCTCAAAAACTGTTTCACTGTTTCACCTGACTCAAG
TCTTGTGTCGTCTATATCTCCAAATTGTGATGCAACCAATCCATACAATG
TCCAAGCTATAGGGTTTGCCCAGTAGTACCATCTCCACCATATTGGAATC
CTTGTTCTTGGGATAATAAACCCCGAAAAGACGTTCCATATTCCATAAAA
TGCAATTGAAACAACGGTCGCAATATGTAGGTTTGGCGTCATAGCAACAC
ACATCATGCCATAGAAGGTGAAGAGCAAAAAGCTCCAGAACATGAAGAAT
ATATACCAAATGAACTTTACAGCAGTCCATTCAAATCCGATCATGGCATA
GACTATAACACCATAAACTACAG
back to top