CX070407

Overview
NameCX070407
Unique NameCX070407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070407 vs. ExPASy Swiss-Prot
Match: FAAA_HUMAN (Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.642e-14
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    4 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 168
            G +LEL+W G KP+ L +G TRKFL DGDEV  TG+C+G+GY +GFG C+GK++P+
Sbjct:  360 GSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYCQGDGYRIGFGQCAGKVLPA 415
[Close]
BLAST of CX070407 vs. ExPASy Swiss-Prot
Match: FAAA_BOVIN (Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    4 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 168
            GC+LEL+W G + + L +G TRKFL DGDEV  TG C+G+GY +GFG C+GK++P+
Sbjct:  360 GCMLELSWKGTRAVELGNGQTRKFLLDGDEVIMTGHCQGDGYRIGFGQCAGKVLPA 415
[Close]
BLAST of CX070407 vs. ExPASy Swiss-Prot
Match: FAAA_RAT (Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    4 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 168
            G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct:  360 GSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 415
[Close]
BLAST of CX070407 vs. ExPASy Swiss-Prot
Match: FAAA_MOUSE (Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    4 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 168
            G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct:  360 GSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 415
[Close]
BLAST of CX070407 vs. ExPASy Swiss-Prot
Match: FAAA_DICDI (Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.839e-12
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 GCLLELTWNGQKPLSLDGFT---RKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 168
            G +LEL+W G K +SL   T   RKF++DGD V  +G CKGNGY +GFG C G I+P+
Sbjct:  366 GSMLELSWKGSKVVSLGTETNEERKFIQDGDSVILSGLCKGNGYQIGFGNCEGTILPA 423
The following BLAST results are available for this feature:
BLAST of CX070407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FAAA_HUMAN1.642e-1458.93Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV... [more]
FAAA_BOVIN8.148e-1457.14Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1[more]
FAAA_RAT4.471e-1255.36Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE... [more]
FAAA_MOUSE4.471e-1255.36Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV... [more]
FAAA_DICDI5.839e-1253.45Fumarylacetoacetase OS=Dictyostelium discoideum GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_16F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16F02-L4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070407 ID=CX070407; Name=CX070407; organism=Citrus sinensis; type=EST; length=440bp
CTTGGATGCTTGCTGGAGTTAACATGGAATGGACAAAAGCCGCTTTCACT
AGATGGGTTTACTCGTAAATTCCTGGAAGATGGAGATGAAGTGACATTTA
CTGGTTTTTGCAAGGGAAACGGTTACACTGTTGGATTTGGAACGTGTTCA
GGAAAAATAGTCCCATCAACCCCTTAGTGAAGCAACCACCCTTGGTGATC
AAAGCGAGTGTCTGCCCATCTGATGAAATCAATTAGAGTGGTTGTGTTTA
CATTGAATCCGCATCTGGTCAGGTCCATGTGTAATAGATCTAATTGAATT
TGTAGCTAACAAGACCGCGAAATGAAGACCTGAAGATGGGACGATTGAAA
AAAGTGCATGTGATGAGAGTATTGAACTAAATGAAGTGAAAATCTTCTTT
TCTTTTCAGTTTATAATTTTTTATTTGGATCTCAAAAAAA
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