CX070391

Overview
NameCX070391
Unique NameCX070391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4626 contig Csv1_Contig4626:482..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.637e-37
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 277
            QAQGNPNMVMALAGNKADLLDARKV+AEEA+ YAQEN LFFMETSAKTATNV DIFYEIAKRLPRVQPA NP+GMVL + PG    S+SCC+
Sbjct:  109 QAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENPTGMVLPNGPGATAVSSSCCA 200          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.673e-37
Identity = 74/92 (80.43%), Postives = 82/92 (89.13%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 277
            Q QGNPNMVMALAGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTATNVNDIFYEIAKRLPR QPA NP+GMVL D+P + + +ASCC+
Sbjct:  109 QKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAGMVLEDKPAQGSQAASCCT 200          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.890e-35
Identity = 73/92 (79.35%), Postives = 79/92 (85.87%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 277
            Q QGNPNMVMALAGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTA NVN IFYEIAKRLPR QPA NP+GMVL+DR  E T + SCC+
Sbjct:  109 QKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAGMVLVDRAAEGTRATSCCT 200          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 229
            Q QG+PN+V+ALAGNK DL   RKV   EAQ YA+ENGL FMETSAKT+ NVN++F EIAK+LP+       SG V
Sbjct:  108 QRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPTTRPGSGRV 183          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 54/96 (56.25%), Postives = 64/96 (66.67%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP---APNPSGMVLMDRPGERTASAS-CCS 277
            Q Q +PN+V+ALAGNKADL   R V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+LP+ +P   A  PS    +D      AS S CCS
Sbjct:  120 QRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQENSPASRSQCCS 215          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18
Identity = 53/96 (55.21%), Postives = 64/96 (66.67%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP---APNPSGMVLMDRPGERTASAS-CCS 277
            Q Q +PN+V+ALAGNKADL   R V  +EAQAYA++N L FMETSAKTA NVN+IF  IAK+LP+ +P   A  P     +D      AS S CCS
Sbjct:  120 QRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.742e-18
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP---APNPSGMVLMDRPGERTASAS-CCS 277
            Q Q +PN+V+ALAGNKADL   R V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+LP+ +P   A  P     +D      AS S CCS
Sbjct:  120 QRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQESNPASRSQCCS 215          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.742e-18
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSG----MVLMDRPGERTASASCCS 277
            Q Q +PN+V+ALAGNKADL   R V  ++AQ YA +N L FMETSAKTA NVN+IF  IAK+LP+ +P   P G     V+  +   + + + CCS
Sbjct:  120 QRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQPSRSQCCS 215          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVLMDRPGERTASASCCS 277
            Q Q +P++V+ALAGNKADL + R V  EEAQAYA +N L FMETSAKTA NVND+F  IAK+LP+ +P      A    G+ L ++  +    + CCS
Sbjct:  119 QRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQN--KSQCCS 214          
BLAST of CX070391 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 2
Query:    2 QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVLMDRPGERTASASCCS 277
            Q Q +P++V+ALAGNKADL + R V  EEAQAYA +N L FMETSAKTA NVND+F  IAK+LP+ +P      A    G+ L ++  +    + CCS
Sbjct:  119 QRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQN--KSQCCS 214          
The following BLAST results are available for this feature:
BLAST of CX070391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RHA1_ARATH2.637e-3782.61Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RAB5_TOBAC7.673e-3780.43Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RHN1_NICPL1.890e-3579.35Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB5A_DICDI7.215e-1961.84Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB5C_CANFA1.607e-1856.25Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5C_BOVIN2.099e-1855.21Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5C_MOUSE2.742e-1855.21Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_CHICK2.742e-1850.00Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5B_PONAB4.677e-1851.02Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE4.677e-1851.02Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16E05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16E05-J10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070391 ID=CX070391; Name=CX070391; organism=Citrus sinensis; type=EST; length=503bp
TCAGGCACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAG
CTGACTTGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTAT
GCCCAGGAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAAC
CAATGTGAATGACATTTTCTATGAAATAGCAAAGAGATTGCCTCGAGTGC
AGCCAGCACCAAATCCATCAGGAATGGTTCTTATGGATAGACCTGGGGAA
AGGACAGCGAGTGCATCATGTTGCTCTTAGATACTTGGGTGGTGATGAGC
ACTGTCTGTTTGTATCTTCTAAATGGCTCCTCTAGCTTTACTAGGAACTT
TTTGAGTCTTATCCTTCCAAGTTTGCTATCGTGTATTATTTGTTGAGATA
TCAGAACTGTACATGCATCTTGCATTTGTATGAACTGGTAAATTGAATTG
GAGAGTGGCTTCCCTTGTAATCAAATCACGTGGCATGTTTCCCTTTCAAA
AAA
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