CX070381

Overview
NameCX070381
Unique NameCX070381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4226 contig Csv1_Contig4226:113..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.823e-48
Identity = 99/252 (39.29%), Postives = 153/252 (60.71%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVHF-IFNDSCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLA 754
            ++QI + P+   KT F+   G + Y RM FGL NAPATFQRCM  I   ++ +   V++DD  +F  S D+ L  L LV ++  + NL L  +KC F+ +    LGH+++  GI+ +  K++ I   P P   +E+++FLG  G+YR+FI +F+ +++P+   L K++     N     AF+KLK L++  PI++ P+++  F L  DASD A+GAVL Q      H + Y S TLN+ ++NYST EKE+LA
Sbjct:  307 FHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLA 554          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.563e-45
Identity = 101/252 (40.08%), Postives = 148/252 (58.73%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVHFIFND-SCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLA 754
            ++QI +  +   KT F+   G + Y RM FGL NAPATFQRCM +I   ++ +   V++DD  IF  S  + L+ + LV  +  + NL L  +KC F+ K    LGHI++  GI+ +  KV  I + P P   +E+R+FLG  G+YR+FI +++ +++P+ + L K           + AFEKLK L+   PI+Q P++   F L  DAS+ A+GAVL Q      H I + S TLND +LNYS  EKE+LA
Sbjct:  306 FHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLA 553          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44
Identity = 100/262 (38.17%), Postives = 153/262 (58.40%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLL-----------AKDVHFIFNDSCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLA 754
            ++QI +   D  KT F+   G + + R+ FGL NAPA FQR +  I  + + +   V++DD  +F + +D    +L LVL   ++ NL +N EK HF+      LG+I+++ GI+ D  KV  IS +PPP +V+E++ FLG   +YR+FI+D++KV++PL NL            +  V    +++ L +F  LK +L SS I+  P ++ PF L  DAS++A+GAVL Q        I Y S +LN  + NY+T EKEMLA
Sbjct:  223 FHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLA 484          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.857e-38
Identity = 93/252 (36.90%), Postives = 138/252 (54.76%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVHFIFNDSCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLA 754
            Y+ I +   D+ K  F CP G+F Y  M +G+  APA FQ  + +I  +  E  +  +MDD  I   S  + + H+  VLQ+    NL++N  KC F       +G+ IS KG    +  +D +     PK  +E+R FLG   + R+FI   S+++ PL NLL KDV + +  +   A E +KQ L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA
Sbjct:  507 YHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLA 758          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.215e-38
Identity = 92/252 (36.51%), Postives = 139/252 (55.16%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVHFIFNDSCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLA 754
            Y+ I +   D+ K  F CP G+F Y  M +G+  APA FQ  + +I  ++ E  +  +MD+  I   S  + + H+  VLQ+    NL++N  KC F       +G+ IS KG    +  +D +     PK  +E+R FLG   + R+FI   S+++ PL NLL KDV + +  +   A E +KQ L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA
Sbjct:  507 YHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLA 758          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.215e-38
Identity = 92/252 (36.51%), Postives = 139/252 (55.16%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVHFIFNDSCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLA 754
            Y+ I +   D+ K  F CP G+F Y  M +G+  APA FQ  + +I  ++ E  +  +MD+  I   S  + + H+  VLQ+    NL++N  KC F       +G+ IS KG    +  +D +     PK  +E+R FLG   + R+FI   S+++ PL NLL KDV + +  +   A E +KQ L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA
Sbjct:  507 YHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLA 758          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.502e-37
Identity = 94/252 (37.30%), Postives = 139/252 (55.16%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVHFIFNDSCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQ--RVDRIPHVIYYASMTLNDAQLNYSTTEKEML 751
            Y+QIP+ PKD+ KT F  P G + Y  M FGL NAP+TF R M   F D+  RF+ V++DD  IF +S ++   HL  VL+R   +NL++  +KC F  +    LG+ I  + I   + K   I + P PKTV++ + FLG   +YRRFI + SK+++P+   +     +        A EKLK  L +SP++   N    + L  DAS   +GAVL +    +++  V+ Y S +L  AQ NY   E E+L
Sbjct:  717 YHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQD--KAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELL 964          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.973e-37
Identity = 93/252 (36.90%), Postives = 139/252 (55.16%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVHFIFNDSCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQ--RVDRIPHVIYYASMTLNDAQLNYSTTEKEML 751
            Y+QIP+ PKD+ KT F  P G + Y  M FGL NAP+TF R M   F D+  RF+ V++DD  IF +S ++   HL  VL+R   +NL++  +KC F  +    LG+ I  + I   + K   I + P PKTV++ + FLG   +YRRFI + SK+++P+   +     +        A +KLK  L +SP++   N    + L  DAS   +GAVL +    +++  V+ Y S +L  AQ NY   E E+L
Sbjct:  691 YHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQD--KAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELL 938          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.973e-37
Identity = 92/263 (34.98%), Postives = 147/263 (55.89%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLL-----------AKDVHFIFNDSCLMAFEKLKQLLTSSPII-QAPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLA 754
            Y+QI +A  D+EKT+F+   G + + R+ FGL NA + FQR +  +  + + +   V++DD  IF ++    + H+  VL+   + N+ ++ EK  F  +    LG I+S  G + D  KV  I   P P  V +VRSFLG A +YR FIKDF+ ++RP+ ++L           +K +   FN++   AF++L+ +L S  +I + P++  PF+L  DAS   +GAVL Q    I  +    S TL   + NY+T E+E+LA
Sbjct:  282 YHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMI----SRTLKQPEQNYATNERELLA 540          
BLAST of CX070381 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.331e-36
Identity = 93/251 (37.05%), Postives = 132/251 (52.59%), Query Frame = 2
Query:    2 YNQIPIAPKDQEKTTFTCPFGIFAYWRMSFGLCNAPATFQRCMLSIFSDMVERFLEVFMDDFSIFGDSFDQCLHHLTLVLQRCTEKNLVLNWEKCHFMVK*GIILGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVHFIFNDSCLMAFEKLKQLLTSSPIIQAPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLA 754
            ++QI +    ++ T+F+   G + + R+ FGL  AP +FQR M   FS +      ++MDD  + G S    L +LT V  +C E NL L+ EKC F +     LGH  + KGI  D  K D+I N P P      R F+    +YRRFIK+F+  SR +  L  K+V F + D C  AF  LK  L +  ++Q P++S  F +  DAS  A GAVL Q  +     + YAS      + N STTE+E+ A
Sbjct:  415 FHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAA 665          
The following BLAST results are available for this feature:
BLAST of CX070381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
POL3_DROME9.823e-4839.29Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME4.563e-4540.08Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME1.734e-4438.17Retrovirus-related Pol polyprotein from transposon... [more]
RTF21_SCHPO1.857e-3836.90Retrotransposable element Tf2 155 kDa protein type... [more]
RTF23_SCHPO9.215e-3836.51Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO9.215e-3836.51Retrotransposable element Tf2 155 kDa protein type... [more]
YI31B_YEAST3.502e-3737.30Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST5.973e-3736.90Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
POLY_DROME5.973e-3734.98Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME1.331e-3637.05Retrovirus-related Pol polyprotein from transposon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16D12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16D12-H24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070381 ID=CX070381; Name=CX070381; organism=Citrus sinensis; type=EST; length=755bp
ATATAATCAGATTCCCATAGCACCAAAAGATCAAGAGAAAACTACTTTCA
CTTGTCCTTTTGGCATATTTGCATATTGGAGAATGTCATTTGGATTATGT
AATGCACCTGCTACATTTCAACGATGCATGTTGAGCATTTTCTCTGATAT
GGTTGAACGATTCCTTGAAGTCTTTATGGATGATTTTTCTATCTTTGGTG
ACTCGTTTGATCAATGTTTACATCATCTAACACTAGTTCTGCAGAGATGT
ACCGAGAAGAACTTAGTCTTGAATTGGGAGAAGTGTCATTTTATGGTAAA
ATAAGGTATTATTCTCGGTCACATCATTTCGAGCAAAGGTATTGAGGTTG
ACAAAGCCAAGGTGGATCTCATTTCTAATCTTCCTCCACCTAAAACAGTC
AGAGAAGTAAGATCTTTCCTTGGGCATGCTGGTTTCTATAGACGTTTCAT
TAAAGATTTTAGCAAAGTTTCTAGACCCTTATGCAATTTACTTGCTAAGG
ACGTACATTTTATCTTTAATGATTCATGTCTTATGGCTTTTGAAAAATTA
AAGCAATTGTTGACATCATCACCCATCATTCAGGCCCCAAACTGGAGCTT
ACCATTTGAGCTCATGTGTGATGCATCTGATTATGCAGTAGGAGCAGTAT
TAGGACAAAGAGTTGATCGAATTCCCCATGTTATTTACTATGCTAGTATG
ACATTGAATGATGCACAGTTGAATTATTCAACTACTGAAAAAGAAATGCT
AGCAG
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