CX070350

Overview
NameCX070350
Unique NameCX070350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070350_ssr792 microsatellite CX070350_ssr792:792..806. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX070350 vs. ExPASy Swiss-Prot
Match: FMO1_ARATH (Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.963e-31
Identity = 66/104 (63.46%), Postives = 77/104 (74.04%), Query Frame = -2 
Query:    4 RRGVSKFIESXXXXXXXXXXXXXXPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQS 315
            R  VSKFIES              P+H FEEDYASCQMAI+PE FF EA+KG I FK++SKWWF++ G+ FED T LEADVVIL TGYDGKKKLKA +PEPF++
Sbjct:  293 RAVVSKFIESYVLWKLPLEKYGLKPNHSFEEDYASCQMAIIPENFFEEADKGMIRFKKSSKWWFYEEGIVFEDGTTLEADVVILATGYDGKKKLKAIVPEPFRT 396

HSP 2 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = -1 
Query:  449 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQ 586
            G  G+ CTM+VRTTHW +PHY +WGLPFF+FYS+R SQFLH  PNQ
Sbjct:  233 GEGGKACTMVVRTTHWGIPHYWVWGLPFFLFYSSRASQFLHDRPNQ 278
[Close]
BLAST of CX070350 vs. ExPASy Swiss-Prot
Match: FMO2_ARATH (Putative flavin-containing monooxygenase 2 OS=Arabidopsis thaliana GN=FMO2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.358e-30
Identity = 66/104 (63.46%), Postives = 74/104 (71.15%), Query Frame = -2 
Query:    4 RRGVSKFIESXXXXXXXXXXXXXXPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQS 315
            R  VSKFIES              PDH FEEDYASCQMA++PE FF EA+KG I FKR + WWF+  G+EFED T LEADVVIL TGYDG KKLKA +PEPF+S
Sbjct:  247 RATVSKFIESYVLWKLPLEKYGLKPDHAFEEDYASCQMALVPEKFFEEADKGMIRFKRTTNWWFYDEGIEFEDGTTLEADVVILATGYDGMKKLKAIVPEPFRS 350
The following BLAST results are available for this feature:
BLAST of CX070350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FMO1_ARATH7.963e-3163.46Probable flavin-containing monooxygenase 1 OS=Arab... [more]
FMO2_ARATH1.358e-3063.46Putative flavin-containing monooxygenase 2 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_16C08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16C08-F16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070350 ID=CX070350; Name=CX070350; organism=Citrus sinensis; type=EST; length=865bp
CAGACTTTGGAAAGGCTCCGGTAAGAAAGCTTTGAGCTTTTTCTTGCCAT
CATAACCGGTGCAAAGAATCACAACATCAGCCTCCAATTTAGTGTTGTCC
TCGAACTCTAGTCCTCCCTTCCAAAACCACCATTTTGAAGCTCTCTTGAA
CACAATCTTTCCCTTTTCAGCCTCAGAGAAAAACCCCTCCGGCATGATAG
CCATCTGGCAAGATGCATAGTCTTCTTCAAATGGGTGGTCTGGTTTCAAT
CCATACTTCAGCAATGGAAGCTTCCATAGCAAATAGGACTCAATGAACTT
GGAAACTCCGCGCCTCTGTCCAGAATTATTATAATGTAGTGTTACCCTTA
GCATGTAAAACAAATTGGAGCTTCACTTGATCTACTTTTAAAGAATGTGA
ACTCACCAAAGGAGATAAAAGGAGACAAAGTAGAGTCCTGAGCAAGCTTT
GATTAGGGCTTCCATGGAGAAACTGAGAAAATCTTGTGGAGTAGAACATG
AAGAAAGGCAAACCCCATATCCGGTAATGAGGTACAGTCCAGTGTGTAGT
CCTTACAATCATAGTGCACGGTTGCCCTTCTGGTCCTAATTTAAATACAT
ATACAAGTTATAAATAACAGATAATGAATTAGCTGTCTCGAAACAAAAAT
GAATTTAAATGAATATGAAACCCATATGACCAGTCAATAAATTAAAGGTT
CATCCATCTTATCTATCATAGTCTCTCCCTCTTCTTGACTTTGCTTAATC
TTAAGAATAATCATATAAAAGAAAGCTTTATTTAAAAAAAAAAAAGAAAA
GAAAAGATATAAGCATATTATGACTGGAAACTTAAATATTATATATCCTG
TACAAGTGAGCGGGA
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