CX070330

Overview
NameCX070330
Unique NameCX070330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070330 vs. ExPASy Swiss-Prot
Match: YMF19_OENBE (Putative ATP synthase protein YMF19 OS=Oenothera bertiana GN=YMF19 PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.912e-59
Identity = 117/160 (73.12%), Postives = 122/160 (76.25%), Query Frame = 3
Query:  288 MPQLDKFTXXXXXXXXXXXXXXXXXXXXNDGDGVLGISRILKLRNQLVSHRGNNSLRPRNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGITCRNDIMLIHVLHGQGKIL 767
            MPQLDKFT                    NDGDGVLGISRILKLRNQL+SHRG N LR   DPNSLE++LRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEIS SRGMERNIFYLI         N GWG+TCRNDIMLIHV HGQG I+
Sbjct:    1 MPQLDKFTYFTQFFWSCLFLFTFYIPICNDGDGVLGISRILKLRNQLLSHRGKNILR--KDPNSLEELLRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISSSRGMERNIFYLISKSSYSTSSNLGWGVTCRNDIMLIHVPHGQGSIV 158          
BLAST of CX070330 vs. ExPASy Swiss-Prot
Match: YMF19_HELAN (Putative ATP synthase protein YMF19 OS=Helianthus annuus GN=YMF19 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.919e-58
Identity = 117/159 (73.58%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  288 MPQLDKFTXXXXXXXXXXXXXXXXXXXXNDGDGVLGISRILKLRNQLVSHRGNNSLRPRNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGITCRNDIMLIHVLHGQGKI 764
            MPQLDKFT                    NDGDG+LGISRILKLRNQL+SHR NN +R + DPNSLEDILRKGFSTG+SYMYSSLFE SQWCKAVDLLGKR+KITLISCFGEISGSRGMERNIFYLI         NPGWGITCRNDIMLIHV HGQG I
Sbjct:    1 MPQLDKFTYFTQFFWSCLFLFTFYIAICNDGDGLLGISRILKLRNQLLSHRTNN-IRSK-DPNSLEDILRKGFSTGLSYMYSSLFEDSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNIFYLISKSSYSTSSNPGWGITCRNDIMLIHVPHGQGSI 157          
BLAST of CX070330 vs. ExPASy Swiss-Prot
Match: YMF19_ARATH (ATP synthase protein YMF19 OS=Arabidopsis thaliana GN=YMF19 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.415e-51
Identity = 112/162 (69.14%), Postives = 120/162 (74.07%), Query Frame = 3
Query:  288 MPQLDKFTXXXXXXXXXXXXXXXXXXXXNDGDGVLGISRILKLRNQLVSHRGNNSLRPRNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGIT---CRNDIMLIHVLHGQGKI 764
            MPQLDKFT                    NDGDGVLGISRILKLRNQL+SHRG  ++R + DPNSLED+LRKGFSTGVSYMY+SLFEVSQWCKAVDLLGKR+KITLISCFGEISGSRGMERNI Y I         N G  IT   CRNDIMLIHV+HGQG I
Sbjct:    1 MPQLDKFTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLLSHRGK-TIRSK-DPNSLEDLLRKGFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNILYNI---SKSSPSNTGRWITCRNCRNDIMLIHVVHGQGSI 157          
BLAST of CX070330 vs. ExPASy Swiss-Prot
Match: YMF19_BRANA (Putative ATP synthase protein YMF19 OS=Brassica napus GN=YMF19 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.824e-51
Identity = 111/162 (68.52%), Postives = 116/162 (71.60%), Query Frame = 3
Query:  288 MPQLDKFTXXXXXXXXXXXXXXXXXXXXNDGDGVLGISRILKLRNQLVSHRGNNSLRPRNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGIT---CRNDIMLIHVLHGQGKI 764
            MPQLDKFT                    NDGDGVLGISRILKLRNQL+SHRG        DPNSLED+LRKGFSTGVSYMY+SLFEVSQWCKAVDLLGKR+KITLISCFGEISGSRGMERNI Y I         N G  IT   CRNDIMLIHV+HGQG I
Sbjct:    1 MPQLDKFTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLLSHRGKTI--QSKDPNSLEDLLRKGFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNILYNI---SKSSPSNTGRWITCRNCRNDIMLIHVVHGQGSI 157          
BLAST of CX070330 vs. ExPASy Swiss-Prot
Match: YMF19_RAPSA (Putative ATP synthase protein YMF19 OS=Raphanus sativus GN=YMF19 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.695e-50
Identity = 110/162 (67.90%), Postives = 115/162 (70.99%), Query Frame = 3
Query:  288 MPQLDKFTXXXXXXXXXXXXXXXXXXXXNDGDGVLGISRILKLRNQLVSHRGNNSLRPRNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGIT---CRNDIMLIHVLHGQGKI 764
            MPQLDKFT                    NDGDGVLGISRILKLRNQL+SHRG        DPNSLED+LRKGFSTGVSYMY+SLFEVSQWCKAVDLLGKR+KITLISCFGEISGSRGMERNI Y I         N G  IT   CRNDIMLIH +HGQG I
Sbjct:    1 MPQLDKFTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLLSHRGKTI--QSKDPNSLEDLLRKGFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNILYNI---SKSSPSNTGRWITCRNCRNDIMLIHAVHGQGSI 157          
BLAST of CX070330 vs. ExPASy Swiss-Prot
Match: YMF19_WHEAT (Putative ATP synthase protein YMF19 OS=Triticum aestivum GN=YMF19 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.301e-42
Identity = 97/160 (60.62%), Postives = 109/160 (68.12%), Query Frame = 3
Query:  288 MPQLDKFTXXXXXXXXXXXXXXXXXXXXNDGDGVLGISRILKLRNQLVSHRGNNSLRPRNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGITCRNDIMLIHVLHGQGKIL 767
            MPQLDK T                    N+ +G+LGISRILKLRNQL+SHRG   +R + DP +LEDILRKGFSTG+SYMYSSL EVSQWCK VD LGKR+KITLIS FGEISGSRGMER I YLI         +    ITC  +IML HVLHGQG I+
Sbjct:    1 MPQLDKLTYFSQFFWLCLLFFTFYILLFNNNNGILGISRILKLRNQLLSHRGGE-IRSK-DPKNLEDILRKGFSTGLSYMYSSLSEVSQWCKTVDYLGKRRKITLISDFGEISGSRGMERQILYLISKSSYNTSSS---RITCWKNIMLTHVLHGQGSII 155          
BLAST of CX070330 vs. ExPASy Swiss-Prot
Match: M660_ARATH (Uncharacterized mitochondrial protein AtMg00660 OS=Arabidopsis thaliana GN=AtMg00660 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 53/63 (84.13%), Postives = 54/63 (85.71%), Query Frame = 3
Query:    3 ETREGNPIGSQRIHSTCSPTDLIFIIFESGGKGSLFCN-GKKRSRFDSAQPNDTSKKCFLSLE 188
            ETREGNPIGSQRIHSTCSPTD IF+I ESGGKGSLFCN  KKRSRFDSAQPNDTS    L LE
Sbjct:   80 ETREGNPIGSQRIHSTCSPTDFIFLILESGGKGSLFCNEKKKRSRFDSAQPNDTSNTNDLCLE 142          
The following BLAST results are available for this feature:
BLAST of CX070330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YMF19_OENBE9.912e-5973.13Putative ATP synthase protein YMF19 OS=Oenothera b... [more]
YMF19_HELAN4.919e-5873.58Putative ATP synthase protein YMF19 OS=Helianthus ... [more]
YMF19_ARATH3.415e-5169.14ATP synthase protein YMF19 OS=Arabidopsis thaliana... [more]
YMF19_BRANA5.824e-5168.52Putative ATP synthase protein YMF19 OS=Brassica na... [more]
YMF19_RAPSA1.695e-5067.90Putative ATP synthase protein YMF19 OS=Raphanus sa... [more]
YMF19_WHEAT1.301e-4260.63Putative ATP synthase protein YMF19 OS=Triticum ae... [more]
M660_ARATH5.681e-2284.13Uncharacterized mitochondrial protein AtMg00660 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_16B09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16B09-D18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070330 ID=CX070330; Name=CX070330; organism=Citrus sinensis; type=EST; length=781bp
GCGAGACCAGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATAGTACC
TGCAGCCCCACGGACTTAATATTCATCATTTTTGAAAGCGGGGGGAAGGG
ATCTCTTTTCTGCAACGGAAAAAAACGGAGCAGATTTGACTCGGCACAAC
CTAACGATACATCCAAAAAGTGCTTTCTTTCGTTGGAAAAACCAATAACC
AATCCACTTCAATTCGAATTCTTCACTACTCATACAGGCTTAACTCCGTT
AAGCTGTCTGGAGGGAATCCTTTTTTCTCAATCAAGCATGCCTCAACTGG
ATAAATTCACTTATTTTACACAATTTTTTTGGTTATGTCTTTTCTTCTTT
ACTTTCTATATTTTCATATGCAATGATGGAGATGGAGTACTTGGGATCAG
CAGAATTCTAAAACTACGGAACCAACTGGTTTCACACCGGGGGAACAATT
CTTTGAGGCCACGCAACGACCCCAACAGTTTGGAAGATATCTTGAGAAAA
GGTTTTAGCACCGGTGTATCCTATATGTACTCTAGCTTATTCGAAGTATC
CCAATGGTGTAAGGCCGTCGACTTATTGGGAAAAAGGAAGAAAATCACTT
TGATCTCTTGTTTCGGAGAAATAAGTGGCTCACGAGGAATGGAAAGAAAC
ATATTCTATTTGATCTCGAAGTCCTCATATAGCACTTCTTCCAATCCTGG
ATGGGGGATCACTTGTAGGAATGATATAATGCTAATCCATGTTCTACACG
GACAAGGAAAAATTTTAATAGAAAAATGATG
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