CX070319

Overview
NameCX070319
Unique NameCX070319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070319 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 64/225 (28.44%), Postives = 88/225 (39.11%), Query Frame = -2
Query:  156 VLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPEKPXXXXXSNRTLPEVKEEPPLDFKGPEK-----PSSSSL------SNRTXXXXXXXXXXKIAKFSPFTGSGRCLNGKXXXXXXXXXXXPLIDNPQQXXXXXXXXXXXXXXXXXXXXXKLVFGSNANQSSNGTPKVLPKSSSGEPPQVEEKPKFQAFTGKKYSLR 797
            VLE +LR ++ LT  D IM+ YNN KYY+ VVE KP+ A+SIIE D  VDF PP+D KE   P                P     GP K     P+S+S         +              KF  F G+G  L+GK              +N                             +N N ++N        ++S       E  KF++F+GK +SL+
Sbjct:  145 VLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKEATSPS------------TSSPGSHVSGPSKGLTFGPASTSAKPIPGGKKKKDESDSDSDSDDEPKFKAFAGTGARLDGKVGTPLGTSPKTLNTNN----------------------------NNNNNNNNNNNNNNNNNNNSNNNNTKNEDTKFKSFSGKGHSLK 329          
BLAST of CX070319 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.006e-15
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = -2
Query:  609 VLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPEKP 797
            VLE  LR+++CLTTGD I + YN K Y + V+ETKP  AVSIIE D  VDF  PL +KEPE+P
Sbjct:  141 VLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERP 203          
BLAST of CX070319 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.477e-14
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = -2
Query:  609 VLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPEKP 797
            VLE  LR+++C+TTGD I + YN K Y + V+ETKP  AVSIIE D  VDF  PL +KEP++P
Sbjct:  141 VLENALRNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPKRP 203          
BLAST of CX070319 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = -2
Query:  612 VLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPEK 797
            VLE  LR+++CLTTGD I + YN K Y + V+ETKP  AVSIIE D  VDF  PL +KEPE+
Sbjct:  141 VLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPER 202          
The following BLAST results are available for this feature:
BLAST of CX070319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UFD1_DICDI5.365e-1528.44Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_RAT7.006e-1560.32Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_MOUSE3.477e-1457.14Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN4.541e-1459.68Ubiquitin fusion degradation protein 1 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_16B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16B01-D2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070319 ID=CX070319; Name=CX070319; organism=Citrus sinensis; type=EST; length=798bp
CAAACATAATGTTATATGCCCAAGGCGCTTAACTGTCTGTGCCCATACCA
GTTCAGGGGTTTACAATTACAACAACATAATGATAAGTGCAAGAAAAGAA
TAGATGTGCTGAACAGTGAACACCCTCAAGGTACGGATCTTGAACAATGT
CAACCTCTCAGTGAATACTTCTTCCCAGTGAATGCTTGGAACTTTGGTTT
TTCCTCGACCTGAGGTGGCTCCCCACTGCTGCTTTTTGGCAGAACTTTTG
GGGTTCCATTTGAAGATTGGTTTGCATTTGAACCAAATACGAGTTTTCCA
GATTTCTGACGAGATGAAGCACTTGATGACTTGGAACCGTTAATCCCATT
GGCAGCATTTTGTTGAGGATTGTCAATCAGTGGAGAGGAAGGTGATACGG
TGGGCTGCGTTGAGGATTTTCCATTTAAGCATCTACCAGAACCGGTAAAT
GGGCTGAACTTGGCAATCTTTTTTGGAGGTTCTTCTTTTACTTCAGGTGG
TGTCCTGTTTGACAGAGAAGATGATGAAGGTTTTTCTGGTCCTTTAAAAT
CAAGAGGAGGCTCTTCTTTTACTTCAGGTAGTGTCCTGTTTGACAGAGAA
GATGATGAAGGTTTTTCTGGTTCTTTAAAATCAAGAGGAGGGATAAAGTC
CACCTCACAGTCTGTTTCAATTATACTGACAGCCGTGGATGGCTTTGTTT
CGACTACATTAATGTAATACTTCTTATTGTTATAAGGAACCATGATAGTG
TCACCAGTGGTTAAGCAAGAGTAGCTTCTCAATGTAGTCTCCAAGACG
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