CX070280

Overview
NameCX070280
Unique NameCX070280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4637 contig Csv1_Contig4637:243..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_ASHGO (1,4-alpha-glucan-branching enzyme OS=Ashbya gossypii GN=GLC3 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30
Identity = 71/162 (43.83%), Postives = 101/162 (62.35%), Query Frame = 1
Query:    1 AYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 480
            +YLNF GNEFGHP+ ++FP  +N  S+  A R ++L+ + L  + +LY+FD+ + + +   K L      V   ++   VI + R  LVFIFNFHPT S+ DY +GV+EAG Y+IILN+D  +FGG   I+E   +  T     +G RN I+V LPSRTA V
Sbjct:  537 SYLNFEGNEFGHPEWLDFPNANNGDSYQYARRQFNLVDDGLLRYKHLYAFDKAMQEAEGKHKWLNTPQAYVSLKHETDKVISFERNGLVFIFNFHPTQSFTDYRIGVDEAGAYRIILNSDREEFGGHRRIEEENSVFHTTDLEWNGRRNFIQVYLPSRTALV 698          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_KLULA (1,4-alpha-glucan-branching enzyme OS=Kluyveromyces lactis GN=GLC3 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.533e-27
Identity = 68/170 (40.00%), Postives = 101/170 (59.41%), Query Frame = 1
Query:    1 AYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLSRILR 504
            AYLNF GNEFGHP+ ++FP  +N  S+  A R ++L+ + L  +  LY FD+ +   ++N K L      V   ++   VI + R  L+FIFNFHPT+S+ DY +GV E G Y+I+LN+D+ ++GG   I E Q    T   + +   N I+V +P+RTA V  L   +R
Sbjct:  547 AYLNFEGNEFGHPEWLDFPNVNNGDSYHYARRQFNLVDDPLLRYQYLYQFDKAMQTTEKNYKWLNTPQAYVSLKHEVDKVIAFERNGLLFIFNFHPTESFTDYRIGVNEPGCYRIVLNSDKHEYGGWDRIDESQSKYFTTDLKWNERNNFIQVYIPNRTALVLALDSRVR 716          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_DEBHA (1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii GN=GLC3 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.002e-27
Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKE-----HQYLQ-RTISKRVDGLRNCIEVPLPSRTAQVYKL 489
            YLNF GNEFGHP+ ++FP   N  S++ A R ++L+ + L  +  L++FD  +  LD    +LL     V   N+   VI + R  L+FIFNFHPT+SY DY +GVE  G YQI+LN+D   FGG G I+E      + LQ  T ++R +   N +   +PSRTA V ++
Sbjct:  537 YLNFEGNEFGHPEWLDFPRKGNGESYAYARRQFNLIEDDLLRYKFLFAFDGAMQHLDTKYGILLSSQAYVSLKNENDKVIVFERNGLLFIFNFHPTNSYADYKIGVETPGVYQIVLNSDSLSFGGHGRIEETNKETGEKLQFFTNNERWNDRSNALFCYIPSRTAIVLQV 706          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_YEAST (1,4-alpha-glucan-branching enzyme OS=Saccharomyces cerevisiae GN=GLC3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.695e-26
Identity = 67/165 (40.61%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 AYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKL 489
            AYLNF GNEFGHP+ ++FP  +N  S+  A R ++L  + L  + NL  FD+ +   ++  K L      V   ++   +I + R  L+FIFNFHPT+SY DY VGVE+AG Y I+LN+D ++FGG   I E      T     +  +N ++V +PSR A V  L
Sbjct:  539 AYLNFEGNEFGHPEWLDFPNVNNGDSYKYARRQFNLADDPLLRYQNLNEFDRSMQLCEKRHKWLNTKQAYVSLKHEGDKMIVFERNNLLFIFNFHPTNSYSDYRVGVEKAGTYHIVLNSDRAEFGGHNRINESSEF-FTTDLEWNNRKNFLQVYIPSRVALVLAL 702          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_CRYNE (1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans GN=GLC3 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.891e-26
Identity = 69/166 (41.57%), Postives = 99/166 (59.64%), Query Frame = 1
Query:    1 AYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLI-KEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKL 489
            AYLNF GNEFGHP+ ++FP   N  SF+ A R ++L+ ++L  +  LY FD  +  L++  K L      V   ++   +I + R  L+FIFNFHPT S+ DY VGV+ AGEY++IL +DE++FGG   I    +Y   T     +G +N ++V  PSRT  V  L
Sbjct:  519 AYLNFEGNEFGHPEWMDFPREGNGNSFAHARRQFNLVDDKLLRYKYLYEFDVAMNWLEDKYKWLNSPQAYVSLKHEGDKMIVFERAGLLFIFNFHPTQSFTDYRVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYF--TTPMEWNGRKNWLQVYSPSRTVLVLGL 682          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_CANGA (1,4-alpha-glucan-branching enzyme OS=Candida glabrata GN=GLC3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.098e-25
Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    1 AYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 480
            AYLNF GNEFGHP+ ++FP   NN S+  A R ++L+ + L  + +L  FD  +   +   + L      V   ++   VI + R   +F+FNFHPT S+ DY +GV+ AG Y+I+LNTD ++FGG   I E Q    T     +  RN I+V +PSRTA V
Sbjct:  541 AYLNFEGNEFGHPEWLDFPRVGNNDSYHYARRQFNLVDDDLLRYRHLNEFDAAMQNCESKHQWLNTPQAYVSLKHEVDKVIAFERNGHLFVFNFHPTQSFTDYRIGVDVAGTYKIVLNTDRAEFGGHNRIDEAQEF-FTTDLEWNNRRNFIQVYIPSRTAIV 701          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_YARLI (1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica GN=GLC3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.874e-25
Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVY 483
            YLNF GNEFGHP+ ++FP   N  SF    R W ++ ++L  + +L  FD  +    ++   L      V   N+   V+ Y R  LVF+FNFHP  S+ DY +GV++ G Y ++L++D  +FGG G I   +    T     +G  NC+ + +PSR A V+
Sbjct:  521 YLNFEGNEFGHPEWLDFPREGNGSSFHYCRRQWPVVDDKLLRYQHLNEFDAAMQHRGDHYGWLSADQAYVSLKNEDDKVVVYERAGLVFVFNFHPNKSFTDYRIGVDQPGTYTLVLDSDSPEFGGFGRIDHEKTRCHTEPLEWNGRANCMHIYIPSRVALVF 682          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_SOLTU (1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.174e-25
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANR--LHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQG 378
            YLNFMGNEFGHP+ ++FP   NN+S+    R W+L  +    +  + +FD+ +  LDE    L  G   V  ++D   V+ + RG LVF+FNFHP ++YE Y VG +  G+Y++ L++D  +FGG G
Sbjct:  607 YLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWNLADSEHLRYKFMNAFDRAMNSLDEKFSFLASGKQIVSSMDDDNKVVVFERGDLVFVFNFHPKNTYEGYKVGCDLPGKYRVALDSDAWEFGGHG 733          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_ASPOR (1,4-alpha-glucan-branching enzyme OS=Aspergillus oryzae GN=gbeA PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.451e-25
Identity = 67/169 (39.64%), Postives = 98/169 (57.99%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGL-IKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLSRIL 501
            YLNF GNEFGHP+ ++FP   NN SF  A R  +L  + L  +  L  FD+ +   +E    L      V   N+   V+ + R  L++IFNFHPT+S+ DY VGVE++G Y+I+L+TD+  FGG    +KE ++    +S   +G  N ++V +P+RTA V  L   L
Sbjct:  523 YLNFEGNEFGHPEWLDFPRDGNNNSFWYARRQLNLTEDHLLRYKFLNDFDRAMQLTEEKYGWLHSPQAYVSLKNETDKVLVFERAGLLWIFNFHPTNSFTDYRVGVEQSGTYRIVLDTDDPAFGGLNRNLKETRFFTTDLS--WNGRSNFLQVYIPTRTALVLALEETL 689          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_EMENI (1,4-alpha-glucan-branching enzyme OS=Emericella nidulans GN=be1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.214e-24
Identity = 64/168 (38.10%), Postives = 94/168 (55.95%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLSRIL 501
            YLNF GNEFGHP+ ++FP   NN SF  A R  +L  + L  +  L  FD+ +   +     L      +   ++   V+ + R  L++IFNFHPT+S+ DY VGVE+AG Y+++L+TD+  FGG G I +      T     +G RN ++V +P+RTA    L   L
Sbjct:  520 YLNFEGNEFGHPEWLDFPRAGNNNSFWYARRQLNLTEDHLLRYRFLNEFDRAMQLTESKYGWLHAPQAYISLKHEGDKVLVFERADLLWIFNFHPTESFTDYRVGVEQAGTYRVVLDTDDQAFGGLGRIDQGTRF-FTTDMEWNGRRNYLQVYIPTRTALALALEETL 686          
The following BLAST results are available for this feature:
BLAST of CX070280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLGB_ASHGO1.934e-3043.831,4-alpha-glucan-branching enzyme OS=Ashbya gossyp... [more]
GLGB_KLULA1.533e-2740.001,4-alpha-glucan-branching enzyme OS=Kluyveromyces... [more]
GLGB_DEBHA2.002e-2741.761,4-alpha-glucan-branching enzyme OS=Debaryomyces ... [more]
GLGB_YEAST1.695e-2640.611,4-alpha-glucan-branching enzyme OS=Saccharomyces... [more]
GLGB_CRYNE2.891e-2641.571,4-alpha-glucan-branching enzyme OS=Cryptococcus ... [more]
GLGB_CANGA1.098e-2540.741,4-alpha-glucan-branching enzyme OS=Candida glabr... [more]
GLGB_YARLI1.874e-2536.421,4-alpha-glucan-branching enzyme OS=Yarrowia lipo... [more]
GLGB_SOLTU4.174e-2541.731,4-alpha-glucan-branching enzyme OS=Solanum tuber... [more]
GLGB_ASPOR5.451e-2539.641,4-alpha-glucan-branching enzyme OS=Aspergillus o... [more]
GLGB_EMENI1.214e-2438.101,4-alpha-glucan-branching enzyme OS=Emericella ni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H02-P3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070280 ID=CX070280; Name=CX070280; organism=Citrus sinensis; type=EST; length=776bp
GCTTATCTCAACTTCATGGGCAATGAATTTGGCCACCCAAAGAGGGTCGA
GTTCCCAATGCCAAGCAACAATTTCTCATTTTCTCTTGCCAATCGTCACT
GGGATTTGCTAGCCAACAGACTACATTCCAACTTATATTCCTTTGATCAG
GAACTGATGAAGTTGGATGAAAATGCAAAGGTGCTTCTGAGAGGTTCGCC
TAGCGTTCACCATGTGAATGATGCCAAGATGGTAATATGTTATATGAGAG
GTCCTCTTGTCTTCATATTCAACTTTCATCCAACAGATTCTTATGAAGAC
TACTCTGTGGGCGTGGAAGAAGCTGGAGAGTATCAAATAATACTAAATAC
TGATGAAAGTAAGTTTGGAGGTCAAGGACTTATTAAGGAGCACCAATATC
TTCAAAGGACCATCAGCAAAAGAGTTGATGGTTTGCGAAACTGCATAGAG
GTGCCTCTACCTAGTAGGACTGCCCAGGTTTATAAACTGAGCCGGATCTT
AAGAATCTAAGTCATTTTGCATTCCGAACAGATACTTGCAGAAATTCGAG
AACGAGAAGACTAATTACATCTTTGTTAAGTCACTCAAATGAGAAATTTT
CTCATTGATGGAGAGATGTTCTGTACTTCAGAACCCCAATCAGCTTGTGA
AGAGAAAGAAATGCATTTGTCCACCGATATTTTGCTACACTAGCTGGTAT
GGGTGTTCAGAATCCAATCTGATCCGCTCAATCTGTAGAAATTTGATTCG
TAAAAATTCGATCTGTAAATTGATGG
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